Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011290m |
Family | GH28 |
Protein Properties | Length: 291 Molecular Weight: 30652.1 Isoelectric Point: 7.8535 |
Chromosome | Chromosome/Scaffold: 086847 Start: 701 End: 2633 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 290 | 0 |
AAACASSEQAVLAVPVGKAYRIWPVQLFGPCKRKLKLLISGAIVAPASPDEWAGRDPMKWLYIYGVDGLSVSGGGTIDGSGQQWWASTCKRKKTPPCYLG PRPKAVHFEACRGVSVQGVTLQNGQQFHLTFTRCTGVKASFLRVIAPADSPNTDGVHLNDSSHVQITDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGI SIGSLGKNRTTDMVENVRVDTCLLTNTTNGVRIKSW |
Full Sequence |
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Protein Sequence Length: 291 Download |
MAASLPLPLA VAVVLAAALL LCGGAEARVL LTLDDFGGVG DGIANDTQAF VDAWAAACAS 60 SEQAVLAVPV GKAYRIWPVQ LFGPCKRKLK LLISGAIVAP ASPDEWAGRD PMKWLYIYGV 120 DGLSVSGGGT IDGSGQQWWA STCKRKKTPP CYLGPRPKAV HFEACRGVSV QGVTLQNGQQ 180 FHLTFTRCTG VKASFLRVIA PADSPNTDGV HLNDSSHVQI TDNLISTGDD CVSMVGNCSD 240 VRVKDISCGP GHGISIGSLG KNRTTDMVEN VRVDTCLLTN TTNGVRIKSW Q 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-50 | 36 | 291 | 257 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-52 | 78 | 291 | 214 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 6.0e-53 | 31 | 291 | 262 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-61 | 26 | 291 | 268 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-93 | 30 | 291 | 262 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF80870.1 | 0 | 26 | 291 | 29 | 294 | unknown [Zea mays] |
GenBank | ACF88280.1 | 0 | 1 | 291 | 1 | 290 | unknown [Zea mays] |
RefSeq | NP_001056198.1 | 0 | 19 | 291 | 23 | 295 | Os05g0542800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151886.1 | 0 | 26 | 291 | 29 | 294 | polygalacturonase [Zea mays] |
RefSeq | XP_002440167.1 | 0 | 23 | 291 | 24 | 292 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000001 | 125 | 289 | 113 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000001 | 123 | 289 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000001 | 123 | 289 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000001 | 123 | 289 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000001 | 123 | 289 | 72 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |