Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011301m |
Family | GH5 |
Protein Properties | Length: 535 Molecular Weight: 58725.7 Isoelectric Point: 7.0618 |
Chromosome | Chromosome/Scaffold: 082030 Start: 374 End: 3715 |
Description | |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 248 | 519 | 2.29813e-43 |
PVLRDHWNTYIVEDDFKFIASSGLTAVRIPVGWWIASDPDPPAPYVGGSLQALDNAFKWAEKYKLGVIIDLHAAPGSQNPWEHSSSRDGTQEWGTTDANI AQTVQVIEFLASRYATSPSLFAVELMNEPLAPRATLDSLTRYYRDGYDAVRRHSPAAYVVMSNRLSSGNATELLQFAGGLRGAVIDVHYYTMFNSMFSNF TVQQNIDFVRTNFSGELAAITTQNGPLTFVEWKVPNATKEEYQKYAAAQMSVYGQATFGWSYWTVKNANNHW |
Full Sequence |
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Protein Sequence Length: 535 Download |
MGCRGGVGLP LLVRRLCFAV LLCAPCLCSL SVAKRTPRPA VKPPPPPPPS QVPAPAPAYP 60 ALPVRAVCLG GWLVTEGWIL PPLFSGIPNK DLLDGTQVQF KSALRKTYIT ADQGGGGAVL 120 ANRTQASDWE TFKLWRINET TFNFRTPGGE FVGIGASDGI IVATATAPTL PETFQIVRCP 180 FDKDRVRIKA ANGYFVQAIA TGEVIADYGE PTRWSDWDAS VFLMTKVGQQ LQGEYQLCNG 240 YGTDKATPVL RDHWNTYIVE DDFKFIASSG LTAVRIPVGW WIASDPDPPA PYVGGSLQAL 300 DNAFKWAEKY KLGVIIDLHA APGSQNPWEH SSSRDGTQEW GTTDANIAQT VQVIEFLASR 360 YATSPSLFAV ELMNEPLAPR ATLDSLTRYY RDGYDAVRRH SPAAYVVMSN RLSSGNATEL 420 LQFAGGLRGA VIDVHYYTMF NSMFSNFTVQ QNIDFVRTNF SGELAAITTQ NGPLTFVEWK 480 VPNATKEEYQ KYAAAQMSVY GQATFGWSYW TVKNANNHWD LEWMIKNGYI SLKG* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06229 | FRG1 | 0.002 | 130 | 206 | 77 | + FRG1-like family. The human FRG1 gene maps to human chromosome 4q35 and has been identified as a candidate for facioscapulohumeral muscular dystrophy. Currently, the function of FRG1 is unknown. | ||
cd00257 | Fascin | 1.0e-7 | 96 | 218 | 123 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
pfam00150 | Cellulase | 2.0e-15 | 238 | 516 | 288 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 8.0e-29 | 229 | 441 | 215 | + Endoglucanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE62967.1 | 0 | 27 | 533 | 20 | 545 | hypothetical protein OsJ_17774 [Oryza sativa Japonica Group] |
RefSeq | NP_001055011.1 | 0 | 27 | 533 | 20 | 524 | Os05g0244500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150774.1 | 0 | 1 | 534 | 1 | 539 | cellulase containing protein [Zea mays] |
RefSeq | XP_002440848.1 | 0 | 24 | 534 | 20 | 539 | hypothetical protein SORBIDRAFT_09g008170 [Sorghum bicolor] |
RefSeq | XP_002464704.1 | 0 | 60 | 533 | 39 | 515 | hypothetical protein SORBIDRAFT_01g024390 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1eqp_A | 2e-33 | 234 | 528 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 1eqc_A | 3e-33 | 234 | 528 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 1cz1_A | 3e-33 | 234 | 528 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
PDB | 2pbo_A | 3e-33 | 234 | 528 | 51 | 382 | A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A |
PDB | 2pb1_A | 3e-33 | 234 | 528 | 51 | 382 | A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex With Unhydrolysed And Covalently Linked 2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside At 1.9 A |