Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00011518m |
Family | GH19 |
Protein Properties | Length: 279 Molecular Weight: 28858.3 Isoelectric Point: 4.9489 |
Chromosome | Chromosome/Scaffold: 082282 Start: 2300 End: 3223 |
Description | homolog of carrot EP3-3 chitinase |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH19 | 75 | 278 | 0 |
VASVVTPAFFDALLAQAAPGCEAAGFYTRDAFLAAAGYYPAFGRTGTVDDSKREIAAFFGNANHETIRFCYINEINGPSKDYCDPSNTQWPCQAGKGYYG RGPLQISWNYNYGPAGQSIGFDGLGDPDAVARSAVVAFRAALWYWMNSVHEPLAAGGGFGATIRAINGALECDGKNPSAVSSRVGYYKQFCQDFGVDPGS NLTC |
Full Sequence |
---|
Protein Sequence Length: 279 Download |
MAPPKQLSSP ATASLAALLA LALLAAAAPA SAQSCGCAAD LCCSRFGFCG TGRDYCGAGC 60 QSGPCTVPET NNVSVASVVT PAFFDALLAQ AAPGCEAAGF YTRDAFLAAA GYYPAFGRTG 120 TVDDSKREIA AFFGNANHET IRFCYINEIN GPSKDYCDPS NTQWPCQAGK GYYGRGPLQI 180 SWNYNYGPAG QSIGFDGLGD PDAVARSAVV AFRAALWYWM NSVHEPLAAG GGFGATIRAI 240 NGALECDGKN PSAVSSRVGY YKQFCQDFGV DPGSNLTC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00442 | lysozyme_like | 2.0e-5 | 165 | 240 | 76 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam00187 | Chitin_bind_1 | 4.0e-6 | 37 | 62 | 26 | + Chitin recognition protein. | ||
smart00270 | ChtBD1 | 1.0e-6 | 37 | 63 | 27 | + Chitin binding domain. | ||
pfam00182 | Glyco_hydro_19 | 2.0e-79 | 78 | 278 | 232 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 2.0e-86 | 79 | 278 | 230 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACX94236.1 | 0 | 12 | 278 | 3 | 267 | chitinase [Lactuca sativa] |
EMBL | CAN79254.1 | 0 | 14 | 278 | 10 | 274 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_001047373.1 | 0 | 32 | 278 | 25 | 271 | Os02g0605900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150754.1 | 0 | 33 | 278 | 26 | 271 | endochitinase PR4 [Zea mays] |
RefSeq | XP_002452418.1 | 0 | 30 | 278 | 21 | 270 | hypothetical protein SORBIDRAFT_04g025430 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 0 | 74 | 278 | 1 | 204 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3hbe_X | 0 | 74 | 278 | 1 | 204 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3hbd_A | 0 | 74 | 278 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 4dyg_B | 0 | 73 | 278 | 1 | 237 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 4dyg_A | 0 | 73 | 278 | 1 | 237 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |