Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011543m |
Family | GH10 |
Protein Properties | Length: 472 Molecular Weight: 52254.9 Isoelectric Point: 6.7408 |
Chromosome | Chromosome/Scaffold: 085328 Start: 126 End: 1777 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 120 | 379 | 0 |
TRDFPFGSAISRSIIGNKPYQEWFTRRFNAAVFENELKWYATEPSPGKEDYAAADELLRFVQSSDVMARGHNIFWEDPRYTPAWVKNLTGSQLRAAVAGR ISSLLSRYRGDFVHWDVSNEMLHFDFYENRLGGNATAEFFHTARRADPLATLFLNDFNVVKACDDLSSSADSYVARLRQLADAGVTFEGIGLEGHFGKPN IPYVRAVLDKLGTLRLPIWLTEVDISSSFDHKTQAAYLEEVLLEGFAHPAVDGIMLWTAM |
Full Sequence |
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Protein Sequence Length: 472 Download |
MAPPVPASAH VKAKILTLEN AASQCIGTAL VRNDCWSFLK GGFALNSSSQ TSVLYFQTAS 60 PNASTISIRS ASLQPFSPEQ WNQHREDRIQ LIRKRFVNVH VSDGNGSRVV GAKVAVRQIT 120 RDFPFGSAIS RSIIGNKPYQ EWFTRRFNAA VFENELKWYA TEPSPGKEDY AAADELLRFV 180 QSSDVMARGH NIFWEDPRYT PAWVKNLTGS QLRAAVAGRI SSLLSRYRGD FVHWDVSNEM 240 LHFDFYENRL GGNATAEFFH TARRADPLAT LFLNDFNVVK ACDDLSSSAD SYVARLRQLA 300 DAGVTFEGIG LEGHFGKPNI PYVRAVLDKL GTLRLPIWLT EVDISSSFDH KTQAAYLEEV 360 LLEGFAHPAV DGIMLWTAMG ANASCYQMCL TDVNFTILPA GDVVGRLLEE WQTREVLGAT 420 NDRGSFNFSA FLGEYKLSVN YQNLTAEGTF SLARSDDTKH INVRLPSGPA A* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 2.0e-34 | 117 | 376 | 284 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 7.0e-58 | 122 | 376 | 271 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-70 | 156 | 404 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC78941.1 | 0 | 6 | 465 | 63 | 522 | hypothetical protein OsI_19385 [Oryza sativa Indica Group] |
GenBank | EEE63172.1 | 0 | 6 | 465 | 63 | 522 | hypothetical protein OsJ_17981 [Oryza sativa Japonica Group] |
RefSeq | NP_001055145.1 | 0 | 6 | 465 | 17 | 476 | Os05g0304900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152556.1 | 0 | 6 | 471 | 105 | 571 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002446197.1 | 0 | 6 | 471 | 106 | 573 | hypothetical protein SORBIDRAFT_06g003350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2g4f_B | 2e-28 | 125 | 376 | 16 | 266 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 2g4f_A | 2e-28 | 125 | 376 | 16 | 266 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 2g3j_A | 2e-28 | 125 | 376 | 16 | 266 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 2g3i_A | 2e-28 | 125 | 376 | 16 | 266 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
PDB | 1nq6_A | 6e-28 | 125 | 376 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV522212 | 258 | 6 | 263 | 0 |
DR965570 | 272 | 29 | 300 | 0 |
FF353430 | 240 | 109 | 347 | 0 |
FL758005 | 207 | 264 | 470 | 0 |
DR959838 | 223 | 251 | 472 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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