Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011599m |
Family | GH5 |
Protein Properties | Length: 479 Molecular Weight: 52473.3 Isoelectric Point: 8.5682 |
Chromosome | Chromosome/Scaffold: 086379 Start: 182 End: 1954 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 49 | 371 | 9.1e-34 |
GKTVYFSGFNAYWLMLVASDPARRGQVVAAFRQAAGHGLNLARTWAFSDGGDAPLQAAPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFHDFGGKRQ YVAWAREAGHHLATADDFFNSTVVKGYYKNHVKTVLTRVNTVTGVAYRDDPTILGWELMNEPRCDADPTGAMVQAWVEEMAPYVKSVDGDHLVTAGLEGF YGDGAHESKDLNPWGIYYGTNFVDTHRAAGVDFATIHLYPDLWLWGSGAAAQLAFFRNWTRSHARDAELYLAKPLLVTEYGKFLWDGVANRTQRDRFLGL VLDSIYASAAAGGPLVGGAFWQL |
Full Sequence |
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Protein Sequence Length: 479 Download |
MAARAPRPGA LAASFLLLFL AAAAAPWWHR GLAAAGLVRV DGTQFVVGGK TVYFSGFNAY 60 WLMLVASDPA RRGQVVAAFR QAAGHGLNLA RTWAFSDGGD APLQAAPGVY DEAMFQGLDF 120 VIAEARRHGI YLLLCLTNNF HDFGGKRQYV AWAREAGHHL ATADDFFNST VVKGYYKNHV 180 KTVLTRVNTV TGVAYRDDPT ILGWELMNEP RCDADPTGAM VQAWVEEMAP YVKSVDGDHL 240 VTAGLEGFYG DGAHESKDLN PWGIYYGTNF VDTHRAAGVD FATIHLYPDL WLWGSGAAAQ 300 LAFFRNWTRS HARDAELYLA KPLLVTEYGK FLWDGVANRT QRDRFLGLVL DSIYASAAAG 360 GPLVGGAFWQ LLDPGMDTLR DGYEIILPED QRAATIIGNH SRQLAELNGQ DVEAVRRRSR 420 RRWGAHRKVH VLGSSSSSSS GSRSSSDTPR LHMPLVRFII SLFRSSISSL FSSAAYRP* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2730 | BglC | 0.0007 | 79 | 389 | 333 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam12876 | Cellulase-like | 0.0005 | 194 | 287 | 103 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
COG3934 | COG3934 | 2.0e-5 | 176 | 369 | 210 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 1.0e-8 | 49 | 329 | 286 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 3.0e-24 | 45 | 383 | 340 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL79758.1 | 0 | 37 | 471 | 1 | 432 | AC096687_22 putative endohydrolase [Oryza sativa Japonica Group] |
GenBank | EAZ29139.1 | 0 | 37 | 465 | 1 | 423 | hypothetical protein OsJ_13202 [Oryza sativa Japonica Group] |
GenBank | EEC76450.1 | 0 | 37 | 471 | 1 | 433 | hypothetical protein OsI_14158 [Oryza sativa Indica Group] |
RefSeq | NP_001051777.1 | 0 | 26 | 471 | 12 | 454 | Os03g0828500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002463596.1 | 0 | 44 | 413 | 47 | 424 | hypothetical protein SORBIDRAFT_01g002630 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 32 | 407 | 1 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 4.06377e-44 | 46 | 329 | 21 | 309 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 4.06377e-44 | 46 | 329 | 21 | 309 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 4.06377e-44 | 46 | 329 | 21 | 309 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 4.06377e-44 | 46 | 329 | 21 | 309 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |