y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011808m |
Family | GH14 |
Protein Properties | Length: 373 Molecular Weight: 42008.5 Isoelectric Point: 7.9002 |
Chromosome | Chromosome/Scaffold: 085444 Start: 1090 End: 2981 |
Description | chloroplast beta-amylase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 1 | 330 | 0 |
IPLPKWVLEEMDKVPDLSYTNRYQQRNKEYISLGCDSLPVLKGRSPMQAYSDFMRSFRNTFEDYLGPIVTEVQVGMGPGGELRYPSCPTEKLNQLGSSSE LGEFQCYDKFMQASLSAHAQIHGIQERGSGGSIGTDGSQHNLEESSFFRADGGYWDTPFGRFFLEWYSGMLVLHGERLCMIADTIFSGTGVTISGKVAGM HWHYYTCAHPSELTAGYYNTLLRDGYLPIAQMFAKYKAALCCGCFDLRDAEKTNPESSPEGTLRQLIGAAKMCNLPLNGENSVTRLDDASLNQVIRSSRL YSGRSSRTSFSFNYVRMNKSLFEFHNWSRF |
Full Sequence |
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Protein Sequence Length: 373 Download |
IPLPKWVLEE MDKVPDLSYT NRYQQRNKEY ISLGCDSLPV LKGRSPMQAY SDFMRSFRNT 60 FEDYLGPIVT EVQVGMGPGG ELRYPSCPTE KLNQLGSSSE LGEFQCYDKF MQASLSAHAQ 120 IHGIQERGSG GSIGTDGSQH NLEESSFFRA DGGYWDTPFG RFFLEWYSGM LVLHGERLCM 180 IADTIFSGTG VTISGKVAGM HWHYYTCAHP SELTAGYYNT LLRDGYLPIA QMFAKYKAAL 240 CCGCFDLRDA EKTNPESSPE GTLRQLIGAA KMCNLPLNGE NSVTRLDDAS LNQVIRSSRL 300 YSGRSSRTSF SFNYVRMNKS LFEFHNWSRF TKFVRQMSDA RTFLARLDVR RGQQYLSSMS 360 VVWVVSRACA YT* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 1.0e-72 | 1 | 337 | 344 | + beta-amylase | ||
PLN02161 | PLN02161 | 5.0e-76 | 1 | 338 | 347 | + beta-amylase | ||
PLN02801 | PLN02801 | 2.0e-84 | 1 | 337 | 344 | + beta-amylase | ||
PLN00197 | PLN00197 | 8.0e-121 | 1 | 341 | 346 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 1.0e-133 | 1 | 339 | 342 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC70262.1 | 0 | 1 | 370 | 28 | 397 | hypothetical protein OsI_01068 [Oryza sativa Indica Group] |
GenBank | EEE54197.1 | 0 | 1 | 370 | 28 | 397 | hypothetical protein OsJ_01033 [Oryza sativa Japonica Group] |
RefSeq | NP_001130896.1 | 0 | 1 | 372 | 168 | 539 | hypothetical protein LOC100192000 [Zea mays] |
RefSeq | NP_001132696.1 | 0 | 1 | 372 | 166 | 537 | hypothetical protein LOC100194176 [Zea mays] |
RefSeq | XP_002454872.1 | 0 | 1 | 372 | 71 | 442 | hypothetical protein SORBIDRAFT_03g000480 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1fa2_A | 0 | 1 | 337 | 106 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
PDB | 1q6g_A | 0 | 1 | 345 | 105 | 449 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1wds_A | 0 | 1 | 345 | 105 | 449 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
PDB | 1wdr_A | 0 | 1 | 345 | 105 | 449 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 2dqx_A | 0 | 1 | 345 | 105 | 449 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL772856 | 257 | 4 | 260 | 0 |
FL775529 | 254 | 4 | 257 | 0 |
GD001877 | 238 | 99 | 336 | 0 |
HO144419 | 265 | 108 | 372 | 0 |
DN231582 | 250 | 123 | 372 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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