Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011920m |
Family | GH10 |
Protein Properties | Length: 421 Molecular Weight: 46550.9 Isoelectric Point: 7.4561 |
Chromosome | Chromosome/Scaffold: 087537 Start: 2 End: 1622 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 73 | 352 | 0 |
VIQVQNSFPIGSCITKAGIQNPAYVDFFTRHFDWAVLENELKWYYTEAVQGLVSYADADELIGFCDRHGKPVRGHCIFWAVENAVQPWVRALNGDQLRAA VEARLRGLVSRYAGRFPHYEVNNEMLHGAFFSQRLGDDVNAHMFRETARIDPAPALFVNDYNVESANDPNATPEKYVALVTDLQRRGAPVGGIGIQGHVT HPVGDIICDALDKLAATGLPIWVTELDVSAADEAVRADDLEIVLREAFAHPAVEGVMLWGFMQGHMWRSHGQLVNADGRL |
Full Sequence |
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Protein Sequence Length: 421 Download |
EPPRGAKVYV HGPPAGVDFK VMDLQVCAVN KIPRLRHLRK KADRVRKRDV VLKLSSRGAE 60 DGVSGVAGAR IQVIQVQNSF PIGSCITKAG IQNPAYVDFF TRHFDWAVLE NELKWYYTEA 120 VQGLVSYADA DELIGFCDRH GKPVRGHCIF WAVENAVQPW VRALNGDQLR AAVEARLRGL 180 VSRYAGRFPH YEVNNEMLHG AFFSQRLGDD VNAHMFRETA RIDPAPALFV NDYNVESAND 240 PNATPEKYVA LVTDLQRRGA PVGGIGIQGH VTHPVGDIIC DALDKLAATG LPIWVTELDV 300 SAADEAVRAD DLEIVLREAF AHPAVEGVML WGFMQGHMWR SHGQLVNADG RLTEAGSRFA 360 GLRREWTSHA RGKVDADGTF RFRGFHGTYQ VFLTTAAGEV KKQTFDVKKG DVPLVLDMNF 420 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 1.0e-37 | 102 | 342 | 262 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 4.0e-75 | 78 | 360 | 304 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 4.0e-76 | 113 | 359 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84241.1 | 0 | 1 | 420 | 168 | 591 | unknown [Zea mays] |
GenBank | EAY72425.1 | 0 | 1 | 420 | 156 | 567 | hypothetical protein OsI_00279 [Oryza sativa Indica Group] |
GenBank | EEE53821.1 | 0 | 1 | 420 | 164 | 575 | hypothetical protein OsJ_00270 [Oryza sativa Japonica Group] |
RefSeq | NP_001147589.1 | 0 | 1 | 420 | 164 | 585 | endo-1,4-beta-xylanase [Zea mays] |
RefSeq | XP_002455242.1 | 0 | 1 | 420 | 174 | 594 | hypothetical protein SORBIDRAFT_03g006980 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1e0v_A | 7e-30 | 82 | 350 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 8e-30 | 82 | 350 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0m_A | 8e-30 | 82 | 350 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0l_A | 8e-30 | 82 | 350 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0k_A | 8e-30 | 82 | 350 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL874412 | 262 | 63 | 324 | 0 |
FL875205 | 243 | 135 | 377 | 0 |
EG387260 | 244 | 57 | 295 | 0 |
FL870562 | 190 | 232 | 421 | 0 |
GO850973 | 328 | 1 | 328 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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