Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011965m |
Family | GH10 |
Protein Properties | Length: 342 Molecular Weight: 38399.2 Isoelectric Point: 6.8005 |
Chromosome | Chromosome/Scaffold: 087738 Start: 3 End: 1293 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 5 | 255 | 0 |
ILQNPAYQRWFTSRFTVTTFENEMKWYSTERVQGREDYSVPDAMLRFARSHGIRVRGHNIFWDQPSQQPAWVQSLSYPQLRQATARRIKSVMSRYAGQVI AWDVVNENLHFNFFEGRFGGDASAAFYRQAHQMDGAALMSMNEFNTLEQPGDPNAVPGKYLGKLFQIKKFPGNTNDGRMAIGLEGHFSTPNIPYIRAALD TMSGAGVPIWLTEIDVAPGPNQAANLEKILREVYAHPAVHGIILWAAWHQR |
Full Sequence |
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Protein Sequence Length: 342 Download |
MSAEILQNPA YQRWFTSRFT VTTFENEMKW YSTERVQGRE DYSVPDAMLR FARSHGIRVR 60 GHNIFWDQPS QQPAWVQSLS YPQLRQATAR RIKSVMSRYA GQVIAWDVVN ENLHFNFFEG 120 RFGGDASAAF YRQAHQMDGA ALMSMNEFNT LEQPGDPNAV PGKYLGKLFQ IKKFPGNTND 180 GRMAIGLEGH FSTPNIPYIR AALDTMSGAG VPIWLTEIDV APGPNQAANL EKILREVYAH 240 PAVHGIILWA AWHQRGCYVM CLTDNSFRNL PTGDVVDKLI REWQTRAHAG VADADGYYEA 300 ELFHGDYKVT VSHPVANATV VQSLTVDKET TKAGNEDTIH V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 1.0e-30 | 19 | 249 | 256 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 6.0e-47 | 4 | 249 | 266 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 6.0e-75 | 28 | 276 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94510.1 | 0 | 1 | 341 | 241 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN31540.1 | 0 | 1 | 341 | 236 | 575 | unknown [Zea mays] |
DDBJ | BAH92032.1 | 0 | 1 | 341 | 74 | 412 | Os03g0201901 [Oryza sativa Japonica Group] |
GenBank | EEC74705.1 | 0 | 1 | 341 | 241 | 579 | hypothetical protein OsI_10421 [Oryza sativa Indica Group] |
RefSeq | XP_002465685.1 | 0 | 1 | 341 | 245 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 1e-29 | 1 | 276 | 19 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v6y_A | 9e-24 | 6 | 250 | 25 | 276 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 1v0n_A | 1e-23 | 6 | 249 | 25 | 266 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 1v0m_A | 1e-23 | 6 | 249 | 25 | 266 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 1v0l_A | 1e-23 | 6 | 249 | 25 | 266 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL870567 | 262 | 81 | 342 | 0 |
FL854687 | 249 | 83 | 331 | 0 |
FL914612 | 214 | 1 | 214 | 0 |
JG785503 | 257 | 67 | 315 | 0 |
FL856836 | 205 | 138 | 342 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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