Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011966m |
Family | GH10 |
Protein Properties | Length: 400 Molecular Weight: 43745.6 Isoelectric Point: 6.0453 |
Chromosome | Chromosome/Scaffold: 087738 Start: 1937 End: 4036 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 260 | 399 | 1.7e-35 |
KGFPLGNAMTQEILDMPEYEEWFAKRFKWATMENAMKWYSTEFEEGHEAYEVADKMLALAEKHNISVRGHNVFWDDESHQMDWVSKLGPDKLKEAVARRL KSVVTHYAGKVIHWDVVNENLHFKFFEEKLGKDASGEIFK |
Full Sequence |
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Protein Sequence Length: 400 Download |
MKISTGKLIL ILLIVLFEGF FVTSVKAGGY SSEKKPGKAG GESSEKTSEK AAGDASEQTS 60 EKAAGDASEQ TSEKADGSSS KKSSVKVPYD YSANIECVKE PEKPLYGGGI ISAASAGGKK 120 LAAPIKGSVL KVDLKKDHHY ALSAWLKLSK GTGDITAIIV PPDGKFITAG AIVAQSDCWT 180 LLKGGATTSS EGKGDLFFET NSTAEIMAES IALQGFSFEE WNAHREEVVA KERKKKVKIT 240 VESGGKPLAD AELSVEWVAK GFPLGNAMTQ EILDMPEYEE WFAKRFKWAT MENAMKWYST 300 EFEEGHEAYE VADKMLALAE KHNISVRGHN VFWDDESHQM DWVSKLGPDK LKEAVARRLK 360 SVVTHYAGKV IHWDVVNENL HFKFFEEKLG KDASGEIFKE |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 8.0e-21 | 265 | 381 | 119 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-29 | 262 | 392 | 140 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-33 | 295 | 399 | 116 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94508.1 | 0 | 84 | 400 | 24 | 352 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABF94509.1 | 0 | 96 | 400 | 9 | 325 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC74704.1 | 0 | 84 | 400 | 24 | 352 | hypothetical protein OsI_10420 [Oryza sativa Indica Group] |
RefSeq | NP_001049300.1 | 0 | 84 | 400 | 24 | 352 | Os03g0201800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002465686.1 | 0 | 3 | 400 | 2 | 370 | hypothetical protein SORBIDRAFT_01g043730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ta3_B | 0.000000000000002 | 264 | 392 | 17 | 150 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1nq6_A | 0.0000000000001 | 264 | 399 | 15 | 156 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1e0v_A | 0.0000000000005 | 249 | 378 | 1 | 128 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 0.0000000000006 | 249 | 378 | 1 | 128 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0m_A | 0.0000000000006 | 249 | 378 | 1 | 128 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |