Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011967m |
Family | GH10 |
Protein Properties | Length: 388 Molecular Weight: 42540.3 Isoelectric Point: 6.2082 |
Chromosome | Chromosome/Scaffold: 087738 Start: 1935 End: 4036 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 248 | 387 | 1.6e-35 |
KGFPLGNAMTQEILDMPEYEEWFAKRFKWATMENAMKWYSTEFEEGHEAYEVADKMLALAEKHNISVRGHNVFWDDESHQMDWVSKLGPDKLKEAVARRL KSVVTHYAGKVIHWDVVNENLHFKFFEEKLGKDASGEIFK |
Full Sequence |
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Protein Sequence Length: 388 Download |
MKISTGKLIL ILLIVLFEGF FVTSVKAGGY SSEKKPGKAG GDASEQTSEK AAGDASEQTS 60 EKADGSSSKK SSVKVPYDYS ANIECVKEPE KPLYGGGIIS AASAGGKKLA APIKGSVLKV 120 DLKKDHHYAL SAWLKLSKGT GDITAIIVPP DGKFITAGAI VAQSDCWTLL KGGATTSSEG 180 KGDLFFETNS TAEIMAESIA LQGFSFEEWN AHREEVVAKE RKKKVKITVE SGGKPLADAE 240 LSVEWVAKGF PLGNAMTQEI LDMPEYEEWF AKRFKWATME NAMKWYSTEF EEGHEAYEVA 300 DKMLALAEKH NISVRGHNVF WDDESHQMDW VSKLGPDKLK EAVARRLKSV VTHYAGKVIH 360 WDVVNENLHF KFFEEKLGKD ASGEIFKE |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 7.0e-21 | 253 | 369 | 119 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-29 | 250 | 380 | 140 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-32 | 283 | 387 | 116 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94508.1 | 0 | 1 | 388 | 1 | 352 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABF94509.1 | 0 | 84 | 388 | 9 | 325 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC74704.1 | 0 | 1 | 388 | 1 | 352 | hypothetical protein OsI_10420 [Oryza sativa Indica Group] |
RefSeq | NP_001049300.1 | 0 | 1 | 388 | 1 | 352 | Os03g0201800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002465686.1 | 0 | 3 | 388 | 2 | 370 | hypothetical protein SORBIDRAFT_01g043730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ta3_B | 0.000000000000002 | 252 | 380 | 17 | 150 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1nq6_A | 0.0000000000001 | 252 | 387 | 15 | 156 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v0n_A | 0.0000000000004 | 237 | 366 | 1 | 128 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v0m_A | 0.0000000000004 | 237 | 366 | 1 | 128 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v0l_A | 0.0000000000004 | 237 | 366 | 1 | 128 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |