Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00012056m |
Family | AA5 |
Protein Properties | Length: 582 Molecular Weight: 62566 Isoelectric Point: 8.2999 |
Chromosome | Chromosome/Scaffold: 082158 Start: 972 End: 2808 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 30 | 580 | 0 |
APATASGASGRWELLQRSIGVSAMHMQLLHNDRVIIFDRTDFGRSNLSLPGGRCRVNPRERVLPAGDCTAHSAEYDIAANVARPLFVFTDTWCSSGTVAP DGSLVQTGGWNDGYRCARTMPVCGGGDRSCDWSEKQDALVANRWYATNQILPDGRAFIIGGRRQFSYEFYPKADPSDTSVVQMPFLMQTRDPEENNLYPF VHLSIDGNLFIFTNNRAILLDYKRNKVVRTYPVLAGGDPRNYPSSGSSVLLPLSPNPTEAEVLVCGGAPSGSYNSTKGGARIFVPALTTCGRIKITDASP AWVIETMPSPRVMGDLILLPNGAEVAIINGAADGTAGWEAASTPNYAPVIYRPNHSPGDRFEEQAATGVPRLYHSSVVLLRDGRLLVGGSNPHIYYNFSD VRYPTELSLEAFSPEYLDPSNDLLRPRILSPSPTGAAASVTYGAKLALKFSVPASARRRRRRGGAGAGSGSGGLEEVSVTMVAPSFTTHSLAMNQRLLFL EVAKTAAVRGLAGTYYVSATMPATAVLAPPGYYMVFVVNGHVPSEGIWVHI |
Full Sequence |
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Protein Sequence Length: 582 Download |
MELRSVRGND HARHLALLLL LACAFAGGIA PATASGASGR WELLQRSIGV SAMHMQLLHN 60 DRVIIFDRTD FGRSNLSLPG GRCRVNPRER VLPAGDCTAH SAEYDIAANV ARPLFVFTDT 120 WCSSGTVAPD GSLVQTGGWN DGYRCARTMP VCGGGDRSCD WSEKQDALVA NRWYATNQIL 180 PDGRAFIIGG RRQFSYEFYP KADPSDTSVV QMPFLMQTRD PEENNLYPFV HLSIDGNLFI 240 FTNNRAILLD YKRNKVVRTY PVLAGGDPRN YPSSGSSVLL PLSPNPTEAE VLVCGGAPSG 300 SYNSTKGGAR IFVPALTTCG RIKITDASPA WVIETMPSPR VMGDLILLPN GAEVAIINGA 360 ADGTAGWEAA STPNYAPVIY RPNHSPGDRF EEQAATGVPR LYHSSVVLLR DGRLLVGGSN 420 PHIYYNFSDV RYPTELSLEA FSPEYLDPSN DLLRPRILSP SPTGAAASVT YGAKLALKFS 480 VPASARRRRR RGGAGAGSGS GGLEEVSVTM VAPSFTTHSL AMNQRLLFLE VAKTAAVRGL 540 AGTYYVSATM PATAVLAPPG YYMVFVVNGH VPSEGIWVHI Q* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd02851 | E_set_GO_C | 1.0e-25 | 460 | 580 | 122 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam09118 | DUF1929 | 1.0e-25 | 460 | 580 | 122 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
pfam07250 | Glyoxal_oxid_N | 3.0e-109 | 53 | 296 | 247 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY89314.1 | 0 | 5 | 581 | 4 | 563 | hypothetical protein OsI_10817 [Oryza sativa Indica Group] |
RefSeq | NP_001049609.1 | 0 | 5 | 581 | 4 | 564 | Os03g0258900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149941.1 | 0 | 1 | 581 | 3 | 577 | glyoxal oxidase [Zea mays] |
RefSeq | XP_002438138.1 | 0 | 83 | 581 | 65 | 558 | hypothetical protein SORBIDRAFT_10g008655 [Sorghum bicolor] |
RefSeq | XP_002468154.1 | 0 | 27 | 581 | 35 | 582 | hypothetical protein SORBIDRAFT_01g040550 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2wq8_A | 0.000000000006 | 119 | 568 | 247 | 646 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
PDB | 2eic_A | 0.000000000007 | 119 | 568 | 225 | 624 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2eib_A | 0.00000000002 | 119 | 568 | 225 | 624 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 1k3i_A | 0.00000000002 | 119 | 568 | 242 | 641 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2vz3_A | 0.00000000003 | 119 | 568 | 225 | 624 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |