Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00012515m |
Family | GH3 |
Protein Properties | Length: 460 Molecular Weight: 49596 Isoelectric Point: 8.4559 |
Chromosome | Chromosome/Scaffold: 084251 Start: 1204 End: 4138 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 129 | 344 | 0 |
VSTRLGIPAMFGIDAVHGHGYVYKATVFPHNVGLGCTRDPELAKKIGAAVALEVRATGIPFIFAPCLAVCRDPRWGRCYESFSEDPKLVQQMTSIISGFQ GEIPAPHYVGDGGTTRGINENNTVATFHQLLGIHMPPYYSAVIQGVSTIKVSYSSWNGVKMHANRFLVTDFLKNKLRFRGFVISDWLGLDRITSPEHADY PLSVKLGILAGIDMVM |
Full Sequence |
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Protein Sequence Length: 460 Download |
MGVPGGGTGS SRGRVVAAAA SLVLLIQLSS CCASPAAAAA TGGGGEQQGA KYKDPRQPLN 60 ARVEDLLRRM TLAEKIWQMS QIDQENATAG VISNYFIGSV LRGGGSVPAA DAPPEAWVEM 120 VETIQRAAVS TRLGIPAMFG IDAVHGHGYV YKATVFPHNV GLGCTRDPEL AKKIGAAVAL 180 EVRATGIPFI FAPCLAVCRD PRWGRCYESF SEDPKLVQQM TSIISGFQGE IPAPHYVGDG 240 GTTRGINENN TVATFHQLLG IHMPPYYSAV IQGVSTIKVS YSSWNGVKMH ANRFLVTDFL 300 KNKLRFRGFV ISDWLGLDRI TSPEHADYPL SVKLGILAGI DMVMIPYQYK EFRDDLTLLV 360 QNGTIPMSRI DDAVRRILRV KFTLGLFENP YADTSLAGEL GKQEHRDLAR EAVRKSLVLL 420 KNGKPGDEPL LPLPKKTHGS ILVAGSHADD LGSQCGGWTI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 6.0e-6 | 417 | 459 | 43 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PLN03080 | PLN03080 | 1.0e-28 | 58 | 459 | 445 | + Probable beta-xylosidase; Provisional | ||
PRK15098 | PRK15098 | 4.0e-62 | 55 | 453 | 433 | + beta-D-glucoside glucohydrolase; Provisional | ||
COG1472 | BglX | 1.0e-81 | 70 | 460 | 401 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 5.0e-83 | 71 | 380 | 317 | + Glycosyl hydrolase family 3 N terminal domain. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF07705.2 | 0 | 51 | 460 | 16 | 444 | Os02g0131400 [Oryza sativa Japonica Group] |
GenBank | EEE56242.1 | 0 | 51 | 460 | 44 | 468 | hypothetical protein OsJ_05253 [Oryza sativa Japonica Group] |
RefSeq | NP_001045791.1 | 0 | 51 | 460 | 44 | 472 | Os02g0131400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451476.1 | 0 | 35 | 460 | 36 | 487 | hypothetical protein SORBIDRAFT_04g002570 [Sorghum bicolor] |
RefSeq | XP_002453253.1 | 0 | 32 | 460 | 28 | 483 | hypothetical protein SORBIDRAFT_04g002560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 52 | 460 | 5 | 432 | C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex Of M. Jannaschii |
PDB | 1x38_A | 0 | 52 | 460 | 5 | 432 | C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex Of M. Jannaschii |
PDB | 1lq2_A | 0 | 52 | 460 | 5 | 432 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 52 | 460 | 5 | 432 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 52 | 460 | 5 | 432 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |