y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00012516m |
Family | GH3 |
Protein Properties | Length: 374 Molecular Weight: 40838.8 Isoelectric Point: 5.6316 |
Chromosome | Chromosome/Scaffold: 086564 Start: 433 End: 2447 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 7 | 101 | 1.5e-29 |
QVTAQDLEDTYQPPFKTCIQEARASCLMCAYNQVNGVPMCARKDLLQKTRDEWGFKGYITSDCDAVAIIHENQTYTTSDEDSIAIVLKAGMDLNC |
Full Sequence |
---|
Protein Sequence Length: 374 Download |
MAICHWQVTA QDLEDTYQPP FKTCIQEARA SCLMCAYNQV NGVPMCARKD LLQKTRDEWG 60 FKGYITSDCD AVAIIHENQT YTTSDEDSIA IVLKAGMDLN CGSFLVRHTH TKSAIEKGKV 120 QEQDIDRALF NLFFVQFRLG IFDKFNDNRL GPSNVCTAEH RELAAEAVKQ GAVLLKNDNG 180 FLPLKRSEVR HVAVIGPSAN DAYAMGGNYT GVPCNPTTFL KGMQAYVAQT TFASGCKDVS 240 CNSTDLFSEA IEAAKAADIV VVVAGLNLTE EREDFDRVSL LLPGKQMNLI HTVASVTKKP 300 LVLVLLGGGP VDVSFAKHDP RIASILWLGY PGEVGGQVLP EILFGKYNPG GKLAMTWYPE 360 SFTAIPMTDL MNL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00933 | Glyco_hydro_3 | 2.0e-26 | 7 | 128 | 124 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 1.0e-28 | 5 | 201 | 207 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 8.0e-33 | 17 | 367 | 396 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-39 | 172 | 359 | 193 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PLN03080 | PLN03080 | 0 | 8 | 373 | 370 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN26462.1 | 0 | 7 | 370 | 87 | 452 | unknown [Zea mays] |
EMBL | CAJ86207.1 | 0 | 39 | 370 | 227 | 560 | B1011H02.4 [Oryza sativa (indica cultivar-group)] |
GenBank | EEE61389.1 | 0 | 7 | 370 | 228 | 593 | hypothetical protein OsJ_15562 [Oryza sativa Japonica Group] |
RefSeq | NP_001053392.1 | 0 | 7 | 370 | 227 | 592 | Os04g0530700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002448225.1 | 0 | 7 | 370 | 223 | 588 | hypothetical protein SORBIDRAFT_06g023450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 8e-34 | 13 | 367 | 205 | 578 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3u48_A | 8e-34 | 13 | 367 | 205 | 578 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3u4a_B | 3e-33 | 13 | 367 | 205 | 578 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3u4a_A | 3e-33 | 13 | 367 | 205 | 578 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 4i8d_B | 3e-19 | 13 | 356 | 182 | 532 | A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JG870908 | 220 | 29 | 248 | 0 |
FL875877 | 251 | 116 | 366 | 0 |
GD028594 | 258 | 80 | 337 | 0 |
FL734409 | 202 | 29 | 230 | 0 |
JG870908 | 23 | 7 | 29 | 0.002 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|