| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00012621m |
| Family | GH10 |
| Protein Properties | Length: 251 Molecular Weight: 28390.9 Isoelectric Point: 5.4848 |
| Chromosome | Chromosome/Scaffold: 099315 Start: 2139 End: 3386 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH10 | 2 | 189 | 0 |
| AAVQNRLQSLLSRYKGRFRHHDVNNEMLHGSFYEDRLGRDIRAYMFREAHKLDPSAVLFVNDYNVEDGCDTKSTPEKFIEQVVDLQERGAPVGGIGVQGH ISHPVGEIICDSLDKLAILGLPIWITELDVTSENEHLRADDLEVFLREAFAHSAVGGIILWGFWEMFMFREHAHLVDADGTINEAGKR | |||
| Full Sequence |
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| Protein Sequence Length: 251 Download |
| MAAVQNRLQS LLSRYKGRFR HHDVNNEMLH GSFYEDRLGR DIRAYMFREA HKLDPSAVLF 60 VNDYNVEDGC DTKSTPEKFI EQVVDLQERG APVGGIGVQG HISHPVGEII CDSLDKLAIL 120 GLPIWITELD VTSENEHLRA DDLEVFLREA FAHSAVGGII LWGFWEMFMF REHAHLVDAD 180 GTINEAGKRY LSLKQEWLTH VNGNVNHQGE FNFRGYHGSY TMEVDTPSGK VTRSFVVDEH 240 SPVQVITLNI * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11790 | Glyco_hydro_cc | 0.0003 | 121 | 190 | 81 | + Glycosyl hydrolase catalytic core. This family is probably a glycosyl hydrolase, and is conserved in fungi and some Proteobacteria. The pombe member is annotated as being from IPR013781. | ||
| COG3693 | XynA | 1.0e-23 | 3 | 164 | 180 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-46 | 1 | 194 | 211 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-59 | 1 | 189 | 207 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ03745.1 | 0 | 1 | 250 | 833 | 1082 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
| GenBank | EAZ39688.1 | 0 | 1 | 250 | 833 | 1082 | hypothetical protein OsJ_24125 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059561.1 | 0 | 1 | 250 | 852 | 1101 | Os07g0456700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459803.1 | 0 | 1 | 250 | 849 | 1098 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
| RefSeq | XP_002510026.1 | 0 | 1 | 249 | 1 | 251 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 4e-19 | 1 | 170 | 129 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 4e-19 | 1 | 170 | 129 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 5e-19 | 4 | 184 | 108 | 289 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 5e-19 | 4 | 184 | 108 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 1e-18 | 4 | 184 | 108 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG781777 | 222 | 1 | 222 | 0 |
| GT796130 | 242 | 4 | 245 | 0 |
| GT037746 | 251 | 1 | 251 | 0 |
| GT858295 | 230 | 1 | 230 | 0 |
| HO130765 | 231 | 1 | 231 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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