| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00012626m |
| Family | PL4 |
| Protein Properties | Length: 538 Molecular Weight: 59116.7 Isoelectric Point: 6.3987 |
| Chromosome | Chromosome/Scaffold: 098891 Start: 467 End: 3705 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 39 | 537 | 0 |
| AAQGVTLSVHQGQVVVDNGMVQVTLSKPKGHITGVRYNGDQNLLDYVRNDNSGGYWDVVWNYPGSGHPSGMIDMLDGTEFRVVSSTEEQVELSFRSAYNP SSPNSVRLNIDKRLVMLKGSSGFHCYAILQHPSGWPALSIAEARLAFKLNPAKFNYMAISDDIQRHMPSAADRDAPRAAPLAYKEAVLLVHPIEPQFKGE VDDKYEYSLDNKDNVVHGWISSRHPNPMGFWVITPSNEFKSGGPMKRELTSHVGPTSLTMFLGTHYIGNDIVLNLGDGEYWKKVLGPVFIYLNSNPKNGN LRALWDDAKSQAQAEVGKWPYSFPGSPDFAKAGDRGSVAGRLLVRDRYVSKDDMPAGTAFVGLAAPGQPGSWATECKQFRTGVYNLYAWVPGFLGDYMYT SPVTVTSGGDIDLGDLVFEPPRSGPTLWEIGVPDRTAAEFFVPDADPKYANKLYLNTDKYRQYGLWERYAELYPEGNDLVFTVGQSNHSKDWFFAHVTR | |||
| Full Sequence |
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| Protein Sequence Length: 538 Download |
| MTAAPAAVAT SIFPVILLVA VSGASLLQLA RAVPPPDHAA QGVTLSVHQG QVVVDNGMVQ 60 VTLSKPKGHI TGVRYNGDQN LLDYVRNDNS GGYWDVVWNY PGSGHPSGMI DMLDGTEFRV 120 VSSTEEQVEL SFRSAYNPSS PNSVRLNIDK RLVMLKGSSG FHCYAILQHP SGWPALSIAE 180 ARLAFKLNPA KFNYMAISDD IQRHMPSAAD RDAPRAAPLA YKEAVLLVHP IEPQFKGEVD 240 DKYEYSLDNK DNVVHGWISS RHPNPMGFWV ITPSNEFKSG GPMKRELTSH VGPTSLTMFL 300 GTHYIGNDIV LNLGDGEYWK KVLGPVFIYL NSNPKNGNLR ALWDDAKSQA QAEVGKWPYS 360 FPGSPDFAKA GDRGSVAGRL LVRDRYVSKD DMPAGTAFVG LAAPGQPGSW ATECKQFRTG 420 VYNLYAWVPG FLGDYMYTSP VTVTSGGDID LGDLVFEPPR SGPTLWEIGV PDRTAAEFFV 480 PDADPKYANK LYLNTDKYRQ YGLWERYAEL YPEGNDLVFT VGQSNHSKDW FFAHVTR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10317 | RGL4_C | 3.0e-13 | 466 | 536 | 71 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10316 | RGL4_M | 3.0e-16 | 372 | 454 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 9.0e-68 | 45 | 339 | 298 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-91 | 26 | 239 | 214 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 32 | 537 | 35 | 571 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 42 | 537 | 47 | 571 | Os12g0131900 [Oryza sativa Japonica Group] |
| GenBank | EEC68814.1 | 0 | 32 | 506 | 35 | 528 | hypothetical protein OsI_37377 [Oryza sativa Indica Group] |
| RefSeq | NP_001066077.1 | 0 | 32 | 537 | 35 | 558 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441731.1 | 0 | 36 | 537 | 57 | 586 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
