Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00013174m |
Family | AA7 |
Protein Properties | Length: 395 Molecular Weight: 42215.4 Isoelectric Point: 8.1398 |
Chromosome | Chromosome/Scaffold: 018720 Start: 23 End: 1207 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 64 | 300 | 0 |
NTTVRPLCIVTASSVPHVQAAVRCGRWHGVRLRVRSGGHDYEGLSYRSVRPEVFAVLDLARLRGVRVVPGEASAWADAGATLGELYYAVGTANPGFLFPG GVCATVGVSGFVSGGGIGLTMRKYGVGGDNVLDARIVNADGDVLDRAAMGEDLFWAIRGGGGESFGVVVAWRLKLSRVPPTVTVANNLRTMEQGVADLLA KWETTILAPSLPADLTIRVALQERHALFQTLYLGRCS |
Full Sequence |
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Protein Sequence Length: 395 Download |
MALAVAILCC FLCGNAFLTS SASPDSFLQC LSAMLPSELV YQQSSSGFTS VLESSVQNPK 60 FLTNTTVRPL CIVTASSVPH VQAAVRCGRW HGVRLRVRSG GHDYEGLSYR SVRPEVFAVL 120 DLARLRGVRV VPGEASAWAD AGATLGELYY AVGTANPGFL FPGGVCATVG VSGFVSGGGI 180 GLTMRKYGVG GDNVLDARIV NADGDVLDRA AMGEDLFWAI RGGGGESFGV VVAWRLKLSR 240 VPPTVTVANN LRTMEQGVAD LLAKWETTIL APSLPADLTI RVALQERHAL FQTLYLGRCS 300 DLIRTVGGVF PELGMTAADC NEMSWLRAMA FIYFGNTGTP AEGLLNRTNS LGTYFKSKSD 360 YVRRAVGRAG WESLFQQQLS RNGNMLMILE PHGGA |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00387 | glcD | 0.002 | 186 | 264 | 91 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
PLN02805 | PLN02805 | 0.002 | 158 | 248 | 106 | + D-lactate dehydrogenase [cytochrome] | ||
pfam01565 | FAD_binding_4 | 2.0e-18 | 69 | 208 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 5.0e-19 | 66 | 278 | 232 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA93766.1 | 0 | 1 | 394 | 10 | 412 | Reticuline oxidase precursor, putative [Oryza sativa (japonica cultivar-group)] |
GenBank | EAY80999.1 | 0 | 1 | 394 | 10 | 412 | hypothetical protein OsI_36182 [Oryza sativa Indica Group] |
GenBank | EAZ01289.1 | 0 | 18 | 394 | 26 | 401 | hypothetical protein OsI_23318 [Oryza sativa Indica Group] |
RefSeq | NP_001067934.1 | 0 | 1 | 394 | 10 | 412 | Os11g0495700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002438541.1 | 0 | 5 | 394 | 10 | 403 | hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 26 | 394 | 12 | 376 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 26 | 394 | 12 | 376 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 17 | 394 | 1 | 376 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 17 | 394 | 1 | 376 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 17 | 394 | 1 | 376 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |