Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00013243m |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42044.6 Isoelectric Point: 4.9551 |
Chromosome | Chromosome/Scaffold: 019010 Start: 3516 End: 5485 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 45 | 374 | 0 |
AWQAACSDGGEPVMAIPGGRTFLLSQVSFQGPCKSPITVKLDGNIMAPNNIWTEKEANLLTFFGVDHLTLDGDGEIDGQGAIWWDCYIRKTCQVRPILLG FARCNNLTVTRIHLKDSAEKHMTLFQCSQVIVDSVSVTAPADSPNTDGITVALSNNTYISNCAIQTGDDCVSVLSDTKNITVTQSRCGPGHGISVGSLGG SETAMVEQITVSNCSFVGTMTGVRIKSWQGGKGYAKGFLFQSLNMTEVQNPIVIDQFYCPQGNCPIKNGGVAISGAKFIDIQGTSSEQEAIRLLCSQSVP CQDIYFSNINLSWASNTAPANATILNAHGS |
Full Sequence |
---|
Protein Sequence Length: 395 Download |
MTRALLLLFV LAIWSAEGQQ RVYNVLDFHA AGDGKTDDAQ AFLAAWQAAC SDGGEPVMAI 60 PGGRTFLLSQ VSFQGPCKSP ITVKLDGNIM APNNIWTEKE ANLLTFFGVD HLTLDGDGEI 120 DGQGAIWWDC YIRKTCQVRP ILLGFARCNN LTVTRIHLKD SAEKHMTLFQ CSQVIVDSVS 180 VTAPADSPNT DGITVALSNN TYISNCAIQT GDDCVSVLSD TKNITVTQSR CGPGHGISVG 240 SLGGSETAMV EQITVSNCSF VGTMTGVRIK SWQGGKGYAK GFLFQSLNMT EVQNPIVIDQ 300 FYCPQGNCPI KNGGVAISGA KFIDIQGTSS EQEAIRLLCS QSVPCQDIYF SNINLSWASN 360 TAPANATILN AHGSTAGVVV PRIQFSDPSV LAQS* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 9.0e-83 | 8 | 384 | 385 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 6.0e-86 | 3 | 382 | 407 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 5.0e-87 | 21 | 363 | 350 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-89 | 50 | 362 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-91 | 20 | 387 | 377 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD68111.1 | 0 | 5 | 386 | 76 | 457 | putative polygalacturonase [Oryza sativa Japonica Group] |
EMBL | CBI36306.1 | 0 | 4 | 384 | 98 | 491 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 24 | 374 | 33 | 391 | unnamed protein product [Vitis vinifera] |
GenBank | EEE53960.1 | 0 | 5 | 273 | 123 | 391 | hypothetical protein OsJ_00563 [Oryza sativa Japonica Group] |
RefSeq | XP_002457261.1 | 0 | 5 | 387 | 27 | 409 | hypothetical protein SORBIDRAFT_03g004360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-23 | 116 | 302 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 9e-23 | 58 | 356 | 26 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-23 | 58 | 356 | 26 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-23 | 58 | 356 | 26 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-23 | 58 | 356 | 26 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |