y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00013315m |
Family | GH35 |
Protein Properties | Length: 842 Molecular Weight: 92845.2 Isoelectric Point: 6.5901 |
Chromosome | Chromosome/Scaffold: 019239 Start: 786 End: 7230 |
Description | beta-galactosidase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 35 | 337 | 0 |
MIDGQRRILFSGSIHYPRSTPDMWEGLIQKAKDGGLDVIQTYVFWNGHEPTPGNYYFEERYDLVRFIKTVQKAGLFVHLRIGPYICGEWNFGGFPVWLKY VPGISFRTDNEPFKTAMQGFTEKIVGMMKSEKLFASQGGPIILSQIENEYGPEGKEFGAAGQSYINWAAKMAVGLGTGVPWVMCKEEDAPDPVINTCNGF YCDAFSANKPYKPMMWTEAWSGWFTEFGGTIRQRPVEDLAFAVARFVQKGGSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVREPKHSHLKE LHR |
Full Sequence |
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Protein Sequence Length: 842 Download |
MGRWWPAALL GCAVAVAVLA AAVECAVTYD KKAVMIDGQR RILFSGSIHY PRSTPDMWEG 60 LIQKAKDGGL DVIQTYVFWN GHEPTPGNYY FEERYDLVRF IKTVQKAGLF VHLRIGPYIC 120 GEWNFGGFPV WLKYVPGISF RTDNEPFKTA MQGFTEKIVG MMKSEKLFAS QGGPIILSQI 180 ENEYGPEGKE FGAAGQSYIN WAAKMAVGLG TGVPWVMCKE EDAPDPVINT CNGFYCDAFS 240 ANKPYKPMMW TEAWSGWFTE FGGTIRQRPV EDLAFAVARF VQKGGSFINY YMYHGGTNFG 300 RTAGGPFITT SYDYDAPIDE YGLVREPKHS HLKELHRAVK LCEQALVSVD PEITTLGTMQ 360 EAHVFRSPSG CAAFLANYNS NSYAKVVFDN ENYSLPPWSI SILPDCKNVV FNSATIGVQT 420 SQMQMWADGA ASMMWERYDE EVDSLAAAPL LTTTGLLEQL NVTRDSSDYL WYITSVEISP 480 SENFLQGGKP LSLSVQSAGH TLHVFINGQL QGSAYGTRED RRIKYNGMAN LRAGTNKIAL 540 LSVACGLPNV GVHYETWNTG VVGPVVLHGL NEGSRDLTWQ TWSYQVGLKG EQMNLNSIEG 600 SSSVEWMQGS LLAQNQQPLA WYRAYFETPT GDEPLALDMG SMGKGQIWIN GQSIGRYWTA 660 YANGDCKGCS YTGTFRAPKC QAGCGQPTQR WYHVPRSWLQ PTRNLLVVFE ELGGDSSKIA 720 LVKRSVSSVC ADVSEDHPNI KKWQIESYGE REYHRAKVHL RCAPGQSISA IKFASFGTPM 780 GTCGSFQQGD CHSANSHTVL EKKCIGLQRC VVAISPESFG GDPCPNVTKR VAVEAVCSPT 840 A* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1874 | LacA | 8.0e-19 | 29 | 328 | 350 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam02140 | Gal_Lectin | 7.0e-22 | 760 | 837 | 82 | + Galactose binding lectin domain. | ||
pfam01301 | Glyco_hydro_35 | 5.0e-163 | 35 | 339 | 320 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 28 | 838 | 812 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM22973.1 | 0 | 24 | 841 | 24 | 843 | AF499737_1 beta-galactosidase [Oryza sativa Japonica Group] |
GenBank | EEC74580.1 | 0 | 24 | 841 | 24 | 851 | hypothetical protein OsI_10152 [Oryza sativa Indica Group] |
GenBank | EEE58382.1 | 0 | 24 | 841 | 24 | 851 | hypothetical protein OsJ_09539 [Oryza sativa Japonica Group] |
RefSeq | NP_001049068.1 | 0 | 24 | 841 | 24 | 841 | Os03g0165400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002465807.1 | 0 | 24 | 841 | 24 | 842 | hypothetical protein SORBIDRAFT_01g046160 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 1.4013e-45 | 31 | 335 | 12 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 4.99997e-41 | 27 | 437 | 11 | 434 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 4.99997e-41 | 27 | 437 | 11 | 434 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |