| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00013474m |
| Family | GT47 |
| Protein Properties | Length: 563 Molecular Weight: 62156.1 Isoelectric Point: 8.2653 |
| Chromosome | Chromosome/Scaffold: 0186495 Start: 187 End: 2185 |
| Description | glycosyltransferase 18 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT47 | 77 | 429 | 0 |
| CEAGLVYVYDLPPEFNHDLVDDCESLWPWYSFCPYLTNGGFGEAAATLPVFFNVTRNVSLHSWYNTDQFQLEVIVHRRLLSHRCRTTDPSQASAFYVPFY VGLDVGSHLWGDNSTAADRDRAGLRLLRWLQNQTSFQRSGGWDHFITLGRITWDFRRYGDDGWGTNFVVLPGMTNVTRLAIEADTLDPMDVGVPYPTGFH PRAAADVRAWQRHVLSRRRSKLFGFAGAPRSGFRGDFRGVLLEECEDAGSERCRAVDCRGTRCTDNGAAVLELFLDSRFCLQPRGDSFTRRSMFDCMVAG AVPVLFWRRTAYDQYRWYLPPGPRGDRGEWSVFIDRRALRAGNVSVRDVLEGI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 563 Download |
| MPESPEPSST PGSPLDAATP SPVPALLRGS LLLLAFLVLQ LVLFWSLLGS PASSRFLPAP 60 GRRNTTWPNG AVDAGACEAG LVYVYDLPPE FNHDLVDDCE SLWPWYSFCP YLTNGGFGEA 120 AATLPVFFNV TRNVSLHSWY NTDQFQLEVI VHRRLLSHRC RTTDPSQASA FYVPFYVGLD 180 VGSHLWGDNS TAADRDRAGL RLLRWLQNQT SFQRSGGWDH FITLGRITWD FRRYGDDGWG 240 TNFVVLPGMT NVTRLAIEAD TLDPMDVGVP YPTGFHPRAA ADVRAWQRHV LSRRRSKLFG 300 FAGAPRSGFR GDFRGVLLEE CEDAGSERCR AVDCRGTRCT DNGAAVLELF LDSRFCLQPR 360 GDSFTRRSMF DCMVAGAVPV LFWRRTAYDQ YRWYLPPGPR GDRGEWSVFI DRRALRAGNV 420 SVRDVLEGIS ERRARRMQER VVEMVPRLVY ASPSSDGLGD GMEDALDVAL GGVLERMRRR 480 RGSIVPREGQ SHLHPEGPFV ARRVDVESTA AAPHSDGKNG SAAASGRGAA GKNQDPPASS 540 HIKTALPEAS ASIRKTLQKS LN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 3.0e-50 | 76 | 429 | 365 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY95237.1 | 0 | 77 | 483 | 64 | 467 | hypothetical protein OsI_17054 [Oryza sativa Indica Group] |
| GenBank | EAZ00823.1 | 0 | 12 | 493 | 15 | 493 | hypothetical protein OsI_22853 [Oryza sativa Indica Group] |
| GenBank | EAZ36900.1 | 0 | 12 | 493 | 15 | 493 | hypothetical protein OsJ_21244 [Oryza sativa Japonica Group] |
| RefSeq | NP_001057569.1 | 0 | 12 | 560 | 15 | 556 | Os06g0342000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002448367.1 | 0 | 1 | 560 | 1 | 568 | hypothetical protein SORBIDRAFT_06g026010 [Sorghum bicolor] |
