Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00013502m |
Family | CBM43 |
Protein Properties | Length: 471 Molecular Weight: 49986.9 Isoelectric Point: 5.5256 |
Chromosome | Chromosome/Scaffold: 0188140 Start: 703 End: 2372 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 383 | 463 | 5.9e-31 |
WCAANAAAGDSRLQAALDWACGHGADCSAIQPGAACYEPNTKLAHASYAFNDYYERKGRASGTCDFSGAASVVYQEPANTC | |||
GH17 | 27 | 370 | 0 |
VGVNYGRVANDLPDPASVVQLLKQNGITMVRIYDANPKVLASLANTGIRVMVMLPNEEVAAAAADPAYALRWARASVTAYRPATQIHAVAVGNEVFDSRP DLNSDLVPAMANVQAALAQLGLADVVKVTTPVAFSAVTDSFPPSSGRFRDDIAQPVMKPMLQFLQRTGSYLTVNIYPFLAYADHPDQISLDYALGNTSPS ARENNGVRDDDTGLVYYSLLDAQLDATYYAMEDMGFPSLRASVGETGHPSSGGRRHGGRDRRHLMAAGDGDDVATVANAHAYVNNVINRVLSGRTSTPHR PGADMDVYIFALFNENQKGAGADDIEQHFGLFYPNMHKVYDFDF |
Full Sequence |
---|
Protein Sequence Length: 471 Download |
MAALARFLLV TVLAAALATN VAGAGEVGVN YGRVANDLPD PASVVQLLKQ NGITMVRIYD 60 ANPKVLASLA NTGIRVMVML PNEEVAAAAA DPAYALRWAR ASVTAYRPAT QIHAVAVGNE 120 VFDSRPDLNS DLVPAMANVQ AALAQLGLAD VVKVTTPVAF SAVTDSFPPS SGRFRDDIAQ 180 PVMKPMLQFL QRTGSYLTVN IYPFLAYADH PDQISLDYAL GNTSPSAREN NGVRDDDTGL 240 VYYSLLDAQL DATYYAMEDM GFPSLRASVG ETGHPSSGGR RHGGRDRRHL MAAGDGDDVA 300 TVANAHAYVN NVINRVLSGR TSTPHRPGAD MDVYIFALFN ENQKGAGADD IEQHFGLFYP 360 NMHKVYDFDF HHTSGGGGAK ASWCAANAAA GDSRLQAALD WACGHGADCS AIQPGAACYE 420 PNTKLAHASY AFNDYYERKG RASGTCDFSG AASVVYQEPA NTCSATAASW C 480 |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam07983 | X8 | 7.0e-22 | 392 | 453 | 67 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. |
smart00768 | X8 | 5.0e-34 | 392 | 465 | 75 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
pfam00332 | Glyco_hydro_17 | 3.0e-86 | 27 | 370 | 344 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002462968.1 | 0 | 21 | 471 | 23 | 480 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
RefSeq | XP_002462968.1 | 2e-28 | 370 | 459 | 466 | 555 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
RefSeq | XP_002462970.1 | 0 | 25 | 471 | 23 | 489 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
RefSeq | XP_002462970.1 | 3e-35 | 370 | 459 | 561 | 650 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
RefSeq | XP_002462970.1 | 4e-38 | 382 | 471 | 487 | 575 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 27 | 370 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 26 | 370 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 26 | 370 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 26 | 370 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 26 | 370 | 1 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |