| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00013509m |
| Family | CE8 |
| Protein Properties | Length: 160 Molecular Weight: 17258.6 Isoelectric Point: 10.0197 |
| Chromosome | Chromosome/Scaffold: 0188760 Start: 1644 End: 2376 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 59 | 159 | 4e-28 |
| VVVDAGGAGDFTSIQQAVDSVPVNNTVRVIVQINAGTYREKVLVPASKPYITFHGAGRDVTVEWHDRASDRGPDGQPLRTYNTASVTVLSYYFTAKNISF K | |||
| Full Sequence |
|---|
| Protein Sequence Length: 160 Download |
| MGLRFASEGS NMARVLSLVL LLATLSSILP PSASQAATRC EYPRHAGHGY KHPVGVRKVV 60 VDAGGAGDFT SIQQAVDSVP VNNTVRVIVQ INAGTYREKV LVPASKPYIT FHGAGRDVTV 120 EWHDRASDRG PDGQPLRTYN TASVTVLSYY FTAKNISFKV |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01095 | Pectinesterase | 4.0e-20 | 59 | 158 | 100 | + Pectinesterase. | ||
| PLN02304 | PLN02304 | 8.0e-21 | 61 | 158 | 100 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 5.0e-30 | 55 | 159 | 108 | + pectinesterase | ||
| PLN02682 | PLN02682 | 6.0e-38 | 57 | 159 | 105 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 4.0e-64 | 36 | 159 | 125 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL53825.1 | 0 | 35 | 159 | 25 | 150 | unknown [Zea mays] |
| EMBL | CAD41229.2 | 0 | 18 | 159 | 1 | 145 | OSJNBa0010H02.16 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CBI31927.1 | 9.99995e-41 | 15 | 159 | 10 | 149 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002303355.1 | 7.00005e-41 | 48 | 159 | 5 | 117 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002448293.1 | 0 | 24 | 159 | 13 | 151 | hypothetical protein SORBIDRAFT_06g024730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0.000000000003 | 58 | 159 | 8 | 104 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 0.002 | 68 | 159 | 43 | 132 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1xg2_A | 0.01 | 56 | 115 | 2 | 61 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
