| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00013701m |
| Family | CE8 |
| Protein Properties | Length: 563 Molecular Weight: 61899.1 Isoelectric Point: 9.4344 |
| Chromosome | Chromosome/Scaffold: 018476 Start: 3486 End: 5481 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 251 | 545 | 0 |
| AVVAQDGSGQFKSIQQAIDAMPKANQGRYVIYVKAGLYDEIVMIPKDKVNIFMYGDGPKRSRVTGRKSFADGITTMKTATFSIEASGFICKNMGFHNTAG AERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIITRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVP DQKLFPDRFKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSMRVKWPGFRVIGRKEAEPFTAGPFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 563 Download |
| MSKALLGGLS AILVVAVVVG VVATVTRSGK KAGDNFTVPG EASLATSGKS VKSLCAPTLY 60 KESCEKTLSQ ANNGTENPKD VFHSVAKVAL ESVKSAVEQS KAIGEAKSKD PMTEGAREDC 120 KNLLEDAVDD LRGMLEMAGG DIKVLFSRSD DLETWLTGVM TFMDTCIDGF VDEKLRADMH 180 AVLRNATELS SNALAITNSL GGLLKKIDLD MFKKDSRRRL LSEQDEKGFP VWMRSPERKL 240 LAAGNQPKPN AVVAQDGSGQ FKSIQQAIDA MPKANQGRYV IYVKAGLYDE IVMIPKDKVN 300 IFMYGDGPKR SRVTGRKSFA DGITTMKTAT FSIEASGFIC KNMGFHNTAG AERHQAVALR 360 VQGDLAAFYN CRFDAFQDTL YVHARRQFFR NCVISGTIDF IFGNSAAVFQ NCLIITRRPM 420 DNQQNSVTAH GRTDPNMKSG LVIQNCRLVP DQKLFPDRFK IPSYLGRPWK EFSRLVIMES 480 TIADFIKPEG YMPWNGDFGI KTLYYAEYNN RGPGAGTSMR VKWPGFRVIG RKEAEPFTAG 540 PFIDGGMWLK YTGTPNILGF KF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02990 | PLN02990 | 3.0e-163 | 44 | 555 | 520 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 3.0e-165 | 30 | 556 | 543 | + pectinesterase | ||
| PLN02468 | PLN02468 | 2.0e-177 | 32 | 555 | 527 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 0 | 48 | 559 | 523 | + Putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 250 | 545 | 297 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF79975.1 | 0 | 27 | 562 | 27 | 563 | unknown [Zea mays] |
| GenBank | EAY94388.1 | 0 | 27 | 561 | 28 | 567 | hypothetical protein OsI_16156 [Oryza sativa Indica Group] |
| GenBank | EAY94391.1 | 0 | 27 | 561 | 28 | 567 | hypothetical protein OsI_16158 [Oryza sativa Indica Group] |
| RefSeq | NP_001052981.1 | 0 | 27 | 561 | 28 | 567 | Os04g0458900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002447958.1 | 0 | 27 | 561 | 27 | 562 | hypothetical protein SORBIDRAFT_06g018850 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 249 | 560 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 250 | 560 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 4e-25 | 250 | 469 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 4e-25 | 250 | 469 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 4e-25 | 250 | 469 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
