Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00013835m |
Family | GH3 |
Protein Properties | Length: 486 Molecular Weight: 51993.4 Isoelectric Point: 6.3533 |
Chromosome | Chromosome/Scaffold: 018590 Start: 1148 End: 3510 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 1 | 194 | 0 |
DPELVKKIGAATALEVRATGIPYVFAPCVAVCRDPRWGRCYESFSEDPKLVQRMTSVISGLQGEIPADGRRGAPFVAAGQRNVAACSKHYVGDGGTARGI NENDTVASFHDLLAVHMPPYYSAVIRGVSTVMVSFSSWNGVKMHANHFLLTDFLKTIGFVISDWRGLDKMTSPEHADYITSVKLGILAGIDMVM |
Full Sequence |
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Protein Sequence Length: 486 Download |
DPELVKKIGA ATALEVRATG IPYVFAPCVA VCRDPRWGRC YESFSEDPKL VQRMTSVISG 60 LQGEIPADGR RGAPFVAAGQ RNVAACSKHY VGDGGTARGI NENDTVASFH DLLAVHMPPY 120 YSAVIRGVST VMVSFSSWNG VKMHANHFLL TDFLKTIGFV ISDWRGLDKM TSPEHADYIT 180 SVKLGILAGI DMVMIPYTYT EFIDDLTALV RNGTIPMSRI DDAVRRILRV KFTMGLFENP 240 YGDPSLAGEL GKPEHRELAR EAVRRSLVLL KNGKDGEPPL LPLPKKAGAI LVAGSHAHNL 300 GYQCGGWTIT WQGQGGNNLT AGTTILDGIR RAVDSGTEVV YAENPDAGFV QRNAGRFDYA 360 VVVVGEPPYA ESFGDNLNLT VPAPGLGVIR TVCGGGVRCA VVLVSGRPLA VEPLVGAVDA 420 LVAAWLPGTE GQGVSDVLFG DYGFTGKLAR TWFRSVEQLP MNAGDAHYDP LFPFGFGLET 480 QPSAA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 4.0e-28 | 8 | 470 | 523 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 8.0e-45 | 267 | 478 | 227 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 2.0e-56 | 1 | 299 | 308 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 9.0e-63 | 1 | 230 | 236 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 2.0e-71 | 1 | 478 | 556 | + beta-D-glucoside glucohydrolase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF07705.2 | 0 | 1 | 481 | 132 | 617 | Os02g0131400 [Oryza sativa Japonica Group] |
RefSeq | NP_001045791.1 | 0 | 1 | 481 | 160 | 645 | Os02g0131400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001051275.1 | 0 | 1 | 485 | 142 | 625 | Os03g0749300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451476.1 | 0 | 1 | 483 | 173 | 660 | hypothetical protein SORBIDRAFT_04g002570 [Sorghum bicolor] |
RefSeq | XP_002453253.1 | 0 | 1 | 483 | 165 | 656 | hypothetical protein SORBIDRAFT_04g002560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 1 | 483 | 120 | 602 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
PDB | 1iex_A | 0 | 1 | 483 | 120 | 602 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
PDB | 1iew_A | 0 | 1 | 483 | 120 | 602 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
PDB | 1iev_A | 0 | 1 | 483 | 120 | 602 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
PDB | 1ieq_A | 0 | 1 | 483 | 120 | 602 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO784016 | 357 | 1 | 353 | 0 |
CK206839 | 305 | 1 | 301 | 0 |
DT559348 | 298 | 11 | 304 | 0 |
CB684818 | 272 | 5 | 272 | 0 |
DW479507 | 299 | 185 | 483 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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