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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014056m |
Family | PL1 |
Protein Properties | Length: 370 Molecular Weight: 40392.5 Isoelectric Point: 8.0761 |
Chromosome | Chromosome/Scaffold: 0185182 Start: 480 End: 2399 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 88 | 288 | 0 |
LWIIFKRDMVITLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDAVSIFGASHIWVDHCSLA NCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYL A |
Full Sequence |
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Protein Sequence Length: 370 Download |
RSIRNSTARR NLGYLSCGTG NPIDDCWRCD PDWHKNRQRL ADCGIGFGRN AIGGRDGKIY 60 VVTDPSDDDA VNPPKGTLRY AVIQDEPLWI IFKRDMVITL KQELIMNSFK TIDGRGANVH 120 IANGACITIQ YVTNVIIHGL HIHDCKPTGN AMVRSSPSHY GWRTIADGDA VSIFGASHIW 180 VDHCSLANCA DGLIDAIMGS TAITVSNNYF THHNEVMLLG HSDSYVKDKA MQVTIAFNHF 240 GEGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSAEPTIN SQGNRYLAPT NPFAKEVTKR 300 VETAQTVWKS WNWRSEGDLL LNGAYFTPSG AGASASYSRA SSLGAKSSSM VGSITSDAGA 360 LSCRKGAAC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 108 | 301 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-71 | 101 | 286 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-81 | 95 | 289 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE02420.2 | 0 | 2 | 369 | 105 | 472 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC76710.1 | 0 | 2 | 369 | 106 | 473 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
GenBank | EEE60442.1 | 0 | 2 | 369 | 76 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
RefSeq | NP_001141589.1 | 0 | 2 | 369 | 99 | 466 | hypothetical protein LOC100273705 [Zea mays] |
RefSeq | NP_001147553.1 | 0 | 2 | 369 | 113 | 467 | pectate lyase 8 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 21 | 362 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 21 | 362 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 40 | 287 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000005 | 111 | 360 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000005 | 111 | 360 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 369 | 2 | 370 | 0 |
FG606120 | 327 | 1 | 327 | 0 |
CK262438 | 297 | 32 | 328 | 0 |
EL457552 | 291 | 13 | 303 | 0 |
EL457563 | 289 | 13 | 301 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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