Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014352m |
Family | GT8 |
Protein Properties | Length: 536 Molecular Weight: 61389.5 Isoelectric Point: 8.6932 |
Chromosome | Chromosome/Scaffold: 041842 Start: 11 End: 4490 |
Description | galacturonosyltransferase 13 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 174 | 504 | 0 |
CLSLRLTDEYSSNALARKQLPPPELVPRLSDNSYYHFVLASDNILAASVVVRSTVRSSLKPERIVFHVITDKKTYPAMHSWFALNSLYPAIVEVKGVHQF DWLTKENVPVLEAIETQRSVRDRYHGNHLARTSASDSPRVFAAKLQAGSPTYTSVLNHIRIYLPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLAGKVNG AVETCRGGDSWVMSKRFRNYFNFSHPLIANNFDPSECAWAYGMNIFDLNAWRKTTIKEKYHHWVKENLMSNFTLWRLGTLPPGLIAFKGHVHPIDPSWHL LGLGYQEKTDINSVEQAAVIHYNGQSKPWLE |
Full Sequence |
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Protein Sequence Length: 536 Download |
MQIRLSPSMR SITISTSHGL LDFMRLKAAA RHFSYRTVFH TVLILAFLLP FVFILTAVMT 60 LEGFNKCSSL DCLGRRLGPR LLGRGNDGSM RLVRDLYSIL DEINSEEAPV DLKVPESFDE 120 FIWDMKNNDY DLRSFAFKLK ATMESMDKEL RSSRLSEQLN KHYAAIAIPK GLYCLSLRLT 180 DEYSSNALAR KQLPPPELVP RLSDNSYYHF VLASDNILAA SVVVRSTVRS SLKPERIVFH 240 VITDKKTYPA MHSWFALNSL YPAIVEVKGV HQFDWLTKEN VPVLEAIETQ RSVRDRYHGN 300 HLARTSASDS PRVFAAKLQA GSPTYTSVLN HIRIYLPELF PSLNKVVFLD DDVVVQHDLS 360 PLWDIDLAGK VNGAVETCRG GDSWVMSKRF RNYFNFSHPL IANNFDPSEC AWAYGMNIFD 420 LNAWRKTTIK EKYHHWVKEN LMSNFTLWRL GTLPPGLIAF KGHVHPIDPS WHLLGLGYQE 480 KTDINSVEQA AVIHYNGQSK PWLEIGFKHL QPFWTRHVNY SNEFIRNCHI MEPQL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02829 | PLN02829 | 6.0e-129 | 126 | 530 | 405 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 3.0e-132 | 130 | 530 | 405 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 0 | 1 | 533 | 534 | + Probable galacturonosyltransferase | ||
PLN02659 | PLN02659 | 0 | 1 | 530 | 532 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 0 | 6 | 531 | 537 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY83641.1 | 0 | 90 | 535 | 1 | 446 | hypothetical protein OsI_38869 [Oryza sativa Indica Group] |
RefSeq | NP_001067123.1 | 0 | 1 | 535 | 1 | 554 | Os12g0578500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001145771.1 | 0 | 1 | 535 | 1 | 535 | hypothetical protein LOC100279278 [Zea mays] |
RefSeq | XP_002284273.1 | 0 | 1 | 532 | 1 | 533 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002443426.1 | 0 | 1 | 535 | 1 | 535 | hypothetical protein SORBIDRAFT_08g019260 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ss9_A | 0.0000007 | 320 | 502 | 70 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1ga8_A | 0.0000007 | 320 | 502 | 70 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1g9r_A | 0.0000007 | 320 | 502 | 70 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |