| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00014420m |
| Family | GH116 |
| Protein Properties | Length: 921 Molecular Weight: 100249 Isoelectric Point: 6.8253 |
| Chromosome | Chromosome/Scaffold: 040895 Start: 1363 End: 6203 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH116 | 493 | 854 | 0 |
| GQFLYMEGMEYNMYNTYDVHFYSSFALLALFPELELSLQRDFARAVLLHDPRLRSTIDGKTARRKVLGAVPHDVGLNDPWVELNAYMLHDAARWKDLNPK FVLQVYRDAVATGDAAFAAAAWPAVYAAMAYMDQFDRDRDGMIENEGIPDQTYDIWSVSGVSAYTGGLWVAALQAAAAMARIVGDRAAEAYFRERHGRAR RVYDGELWNGAYFNYDNSGGATSSSIMADQLAGQWYARACGLEPVVEEGKARSALATVLDYNVMRVRGGAVGAVNGMRPDGSVDASSTQSKEVWPGVTYA VAAAMVHEGMPEAAFRTAKGAHDAAWSKDGFGYAFQTPEAWTEDGGYRSLHYMRPLSIWAMQ | |||
| Full Sequence |
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| Protein Sequence Length: 921 Download |
| MGSAELAQAK VLSHIDCSRP ASRTWQRRFD DEGKKVAMFS MTMNDMMALV PMIVKILKLQ 60 VEESAKGRAT VYDPLRKWMD NCYRGVPLGG LGAGSIGRSY RGYFQQFQIF PAFVSRPNGK 120 KYSTVLSAPT AGLLKGVGKA GIGSWDWKLK EDKCTYHALF PRSWTVYDGE PDPEIKITCR 180 QISPFIPHNY KESSFPAAVF TFTVHNSGST PADVTLLFTW ANSVGGKSEL TGNHSNSKMK 240 DRDGVSGVLL HHRTADGHPP VTFAIASQET DDVRVSVCPS FMMGASSSGQ FTATDMWNEI 300 KKHGSFGHAG ACNASTAASK PGSSVGAAVA ASTAVPAGAT RVVSFSLAWA CPDVKFAAGT 360 TYHRRYTKFY GVDADAAAEQ LARDALLEHM NWESQIEEWQ RPILYDERLP EWYPVALFNE 420 LYYLNAGGTI WTDGQPPKNA AGFASSSPFL LDAPTGGGSA VDGIVSAVAS ATERSHAAAF 480 GPALLRGGGE NVGQFLYMEG MEYNMYNTYD VHFYSSFALL ALFPELELSL QRDFARAVLL 540 HDPRLRSTID GKTARRKVLG AVPHDVGLND PWVELNAYML HDAARWKDLN PKFVLQVYRD 600 AVATGDAAFA AAAWPAVYAA MAYMDQFDRD RDGMIENEGI PDQTYDIWSV SGVSAYTGGL 660 WVAALQAAAA MARIVGDRAA EAYFRERHGR ARRVYDGELW NGAYFNYDNS GGATSSSIMA 720 DQLAGQWYAR ACGLEPVVEE GKARSALATV LDYNVMRVRG GAVGAVNGMR PDGSVDASST 780 QSKEVWPGVT YAVAAAMVHE GMPEAAFRTA KGAHDAAWSK DGFGYAFQTP EAWTEDGGYR 840 SLHYMRPLSI WAMQWALSPP KLHKDLRVAA ASEKSPADAA LGQAQFEKLA SMLRLPEEPQ 900 QPKGYLWAIY NVIRQMASPA * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4354 | COG4354 | 2.0e-25 | 80 | 433 | 377 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 2.0e-51 | 85 | 371 | 309 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 4.0e-57 | 492 | 857 | 384 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 2.0e-127 | 493 | 855 | 367 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE67921.1 | 0 | 1 | 920 | 1 | 919 | hypothetical protein OsJ_25789 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060825.1 | 0 | 1 | 920 | 1 | 928 | Os08g0111200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002444904.1 | 0 | 1 | 919 | 1 | 928 | hypothetical protein SORBIDRAFT_07g001140 [Sorghum bicolor] |
| RefSeq | XP_002450573.1 | 0 | 24 | 915 | 38 | 947 | hypothetical protein SORBIDRAFT_05g007160 [Sorghum bicolor] |
| RefSeq | XP_002528846.1 | 0 | 11 | 911 | 21 | 943 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EG376486 | 280 | 1 | 266 | 0 |
| FL855532 | 274 | 571 | 844 | 0 |
| EE024511 | 289 | 557 | 844 | 0 |
| DR806818 | 289 | 557 | 844 | 0 |
| EC904198 | 279 | 567 | 844 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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