| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00014435m |
| Family | CE11 |
| Protein Properties | Length: 248 Molecular Weight: 26723.4 Isoelectric Point: 5.4059 |
| Chromosome | Chromosome/Scaffold: 041981 Start: 2124 End: 4029 |
| Description | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE11 | 26 | 248 | 0 |
| QQTLAATVSRSGVGLHSGARVTATLIPAHAGEGRYFLVDGEEEARLAAEVGNAEPRSQLCTTLRRTEGGGPRVRTVEHLLSAMEALGVDNCRVEVSGGDE IPLLDGSAQEWVEAIQSAGLCAAQDTSGRNLEKLAPQINEPVYLQRDDCFIAAFPSLQIRISYGIDFPKVPAIECQWFSTYLDPNIYSSKIAPARTFCIF EEIEKIRGAGLIKGGSLENAMVC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 248 Download |
| MSSAAAQALK FVSRAALSWK PTRRPQQTLA ATVSRSGVGL HSGARVTATL IPAHAGEGRY 60 FLVDGEEEAR LAAEVGNAEP RSQLCTTLRR TEGGGPRVRT VEHLLSAMEA LGVDNCRVEV 120 SGGDEIPLLD GSAQEWVEAI QSAGLCAAQD TSGRNLEKLA PQINEPVYLQ RDDCFIAAFP 180 SLQIRISYGI DFPKVPAIEC QWFSTYLDPN IYSSKIAPAR TFCIFEEIEK IRGAGLIKGG 240 SLENAMVC |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK13188 | PRK13188 | 4.0e-51 | 26 | 247 | 227 | + bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed | ||
| TIGR00325 | lpxC | 1.0e-54 | 26 | 248 | 224 | + UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| COG0774 | LpxC | 2.0e-66 | 26 | 248 | 229 | + UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane] | ||
| pfam03331 | LpxC | 9.0e-67 | 26 | 248 | 228 | + UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. | ||
| PRK13186 | lpxC | 7.0e-80 | 26 | 248 | 224 | + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008759 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN52736.1 | 0 | 1 | 248 | 1 | 238 | Hypothetical protein [Oryza sativa Japonica Group] |
| GenBank | ABF94721.1 | 0 | 1 | 248 | 1 | 244 | UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94722.1 | 0 | 1 | 248 | 1 | 244 | UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001049426.1 | 0 | 1 | 248 | 1 | 244 | Os03g0223900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002468246.1 | 0 | 1 | 248 | 1 | 248 | hypothetical protein SORBIDRAFT_01g042410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4fw7_D | 3e-26 | 26 | 248 | 7 | 220 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
| PDB | 4fw7_C | 3e-26 | 26 | 248 | 7 | 220 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
| PDB | 4fw7_B | 3e-26 | 26 | 248 | 7 | 220 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
| PDB | 4fw7_A | 3e-26 | 26 | 248 | 7 | 220 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
| PDB | 4fw6_D | 3e-26 | 26 | 248 | 7 | 220 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| HX136805 | 242 | 7 | 248 | 0 |
| CK207177 | 242 | 7 | 248 | 0 |
| CT850072 | 248 | 1 | 248 | 0 |
| BG274475 | 166 | 82 | 247 | 0 |
| ES436822 | 235 | 17 | 248 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |