Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014455m |
Family | GH28 |
Protein Properties | Length: 349 Molecular Weight: 37337.9 Isoelectric Point: 5.3165 |
Chromosome | Chromosome/Scaffold: 041365 Start: 3742 End: 6313 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 29 | 320 | 0 |
YGRGRELPGGRYISLIHGSGLQDVVITGENGTIDGQGSVWWDMWKKGTLPYTRPHLLELMTSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTVLAPHD SPNTDGIDPDSSSNVCIEDCYISTGDDSIAIKSGWDEYGISYGHPSSDITVRRITGSSPFAGFAVGSETSGGVQNVLAEHLNFFGSGYGIHIKTNTGRGG FIRNVTISDVTLDNVRYGLRIAGDVGDHPDDRYNRSALPVVDALTIKNVQGQNIKEAGLIKGIPYSAFSRICLSNVKLSGGAPVQPWKCEAV |
Full Sequence |
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Protein Sequence Length: 349 Download |
MTLFLARGAV IRATQDTPSW PLIEPLPSYG RGRELPGGRY ISLIHGSGLQ DVVITGENGT 60 IDGQGSVWWD MWKKGTLPYT RPHLLELMTS SDIIVSNVVF QDSPFWNIHP VYCSNVVIRN 120 VTVLAPHDSP NTDGIDPDSS SNVCIEDCYI STGDDSIAIK SGWDEYGISY GHPSSDITVR 180 RITGSSPFAG FAVGSETSGG VQNVLAEHLN FFGSGYGIHI KTNTGRGGFI RNVTISDVTL 240 DNVRYGLRIA GDVGDHPDDR YNRSALPVVD ALTIKNVQGQ NIKEAGLIKG IPYSAFSRIC 300 LSNVKLSGGA PVQPWKCEAV TGGALDVQPS PCTELTSTSG TSFCTNSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-23 | 56 | 309 | 265 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 1.0e-23 | 44 | 244 | 205 | + polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-32 | 49 | 337 | 301 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-36 | 44 | 324 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-46 | 1 | 270 | 302 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY74990.1 | 0 | 1 | 348 | 98 | 445 | hypothetical protein OsI_02888 [Oryza sativa Indica Group] |
GenBank | EAY99223.1 | 0 | 1 | 346 | 103 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
RefSeq | NP_001043594.1 | 0 | 20 | 348 | 1 | 329 | Os01g0618900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141464.1 | 0 | 1 | 348 | 99 | 446 | hypothetical protein LOC100273574 [Zea mays] |
RefSeq | XP_002455965.1 | 0 | 1 | 348 | 100 | 447 | hypothetical protein SORBIDRAFT_03g028140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-35 | 40 | 310 | 113 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-35 | 40 | 310 | 113 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-35 | 40 | 310 | 113 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-35 | 40 | 310 | 113 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-18 | 1 | 307 | 63 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO864447 | 300 | 50 | 349 | 0 |
GO837914 | 288 | 41 | 328 | 0 |
EG383332 | 277 | 19 | 295 | 0 |
EB670814 | 269 | 70 | 338 | 0 |
CO448718 | 277 | 73 | 349 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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