Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014489m |
Family | GT47 |
Protein Properties | Length: 500 Molecular Weight: 55464.7 Isoelectric Point: 9.5708 |
Chromosome | Chromosome/Scaffold: 040316 Start: 1293 End: 4956 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 102 | 422 | 0 |
PVKIYMYDLPPKFTYGVVRSYTAARAPSGSADAAAVLPDEQLRYPGHQHSAEWWLFKDLLRRGPRDRPVARVDDPHDADLFYVPFFSSLSLVVNPIRPPA AANASGVAAAYSDEAMQEELLEWLERQPYWRRHGGRDHVFICQDPNALYRVIDRISNAILLVSDFGRLRTDQASLVKDVILPYSHRINSFKGDIGIDGRS SLLFFMGNRYRKEGGKVRDALFQILENEEDVTIKHGAQSRESRRAATHGMHSSKFCLHPAGDTPSACRLFDALVSLCVPVIVSDYIELPFEDVIDYSTIS IFVGTSKAVQPGYLTSMLRRV |
Full Sequence |
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Protein Sequence Length: 500 Download |
MWERGRPPRK PRPSLIIVPP PPPPPPRLNL LLPRSLLALA ARAMPSRRPS PFLLVLLALA 60 LALLFLLLSP SSPSASRLSR SLASGSASAT SSPASPAAPP APVKIYMYDL PPKFTYGVVR 120 SYTAARAPSG SADAAAVLPD EQLRYPGHQH SAEWWLFKDL LRRGPRDRPV ARVDDPHDAD 180 LFYVPFFSSL SLVVNPIRPP AAANASGVAA AYSDEAMQEE LLEWLERQPY WRRHGGRDHV 240 FICQDPNALY RVIDRISNAI LLVSDFGRLR TDQASLVKDV ILPYSHRINS FKGDIGIDGR 300 SSLLFFMGNR YRKEGGKVRD ALFQILENEE DVTIKHGAQS RESRRAATHG MHSSKFCLHP 360 AGDTPSACRL FDALVSLCVP VIVSDYIELP FEDVIDYSTI SIFVGTSKAV QPGYLTSMLR 420 RVSSERILEY QREIKKVKRF FEYEDPDGPV NEIWRQVSLK APLVKLLTNR NKRLVERGTN 480 GTDCSCICST TPTDMTTAG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 6.0e-70 | 103 | 422 | 331 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG27631.1 | 0 | 103 | 498 | 60 | 455 | exostosin-like [Zea mays] |
GenBank | ACN31783.1 | 0 | 103 | 498 | 104 | 499 | unknown [Zea mays] |
GenBank | EEE67431.1 | 0 | 1 | 491 | 1 | 494 | hypothetical protein OsJ_24780 [Oryza sativa Japonica Group] |
RefSeq | NP_001060019.1 | 0 | 1 | 491 | 1 | 494 | Os07g0567000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002460871.1 | 0 | 42 | 498 | 43 | 499 | hypothetical protein SORBIDRAFT_02g036640 [Sorghum bicolor] |