CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00014532m
FamilyGH38
Protein PropertiesLength: 917 Molecular Weight: 104768 Isoelectric Point: 6.3725
ChromosomeChromosome/Scaffold: 042044 Start: 1200 End: 5232
Descriptiongolgi alpha-mannosidase II
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH3812392e-40
  MEGNMWLNDTIGVVPKNSWSIDPFGYSSTMAYLLRRMGFHNMLIQRTHYELKKELAMKKNLEYLWRQNWDIEETTDIFVHMMPFYSYDIPHTCGPEPAIC
  CQFDFARMRGFSYESCPWRFDPVETDADNVQERATKLLDQYKKKSTLYRTNTLLIPLGDDFRYVSVDEAEVQFRNYEKLFDYINSNPHLNAEVKFGTLED
  YFSTLRDEAEKINYSRPGELGSAELQGFPTLSGDFFTYA
Full Sequence
Protein Sequence     Length: 917     Download
MEGNMWLNDT IGVVPKNSWS IDPFGYSSTM AYLLRRMGFH NMLIQRTHYE LKKELAMKKN    60
LEYLWRQNWD IEETTDIFVH MMPFYSYDIP HTCGPEPAIC CQFDFARMRG FSYESCPWRF    120
DPVETDADNV QERATKLLDQ YKKKSTLYRT NTLLIPLGDD FRYVSVDEAE VQFRNYEKLF    180
DYINSNPHLN AEVKFGTLED YFSTLRDEAE KINYSRPGEL GSAELQGFPT LSGDFFTYAD    240
RNQDYWSGYY VSRPFFKAVD RVLEQTLRAS EILGSFVLGY CQKFQCAKLP ISFSHKLTAA    300
RRNLALFQHH DGVTGTAKDH VVVDYGTRMH TSLQDLQLFM SRAVEVLLGD FHDRSDPTLL    360
SHFETVQERS KYDVQPVHRV LDPHEGKAQS IVFFNPLEQT RDEIVMVVVS TLDVSVLNSN    420
GSCLQSQVSP EWKFVSDEKI STGRHRLYWR ASVPALGLET YYVVTGQDCE KAIPAVVKTF    480
TASQQFPCPE PYVCSKLEGK TVEMKNSYYT LSFDVSHGLL QTVTGHKDGE QIVIGEEIGM    540
YRSHGSGAYL FKPIGEAHSI VEEGGHFILT EGPLVQEAHS LPKTEWHKSP LSHSTRIYDC    600
GDSIQDMLIE KEYHIELVGH VFNDKELIVR YKTNIDNQRI FYSDLNGFQM SRRQTYDKIP    660
LQGNYYPMPS LAFLQDSLGT RFSVHSKQSL GAASLKNGWL EIMLDRRLVQ DDGRGLGQGV    720
MDNRPMNVIF HLLRESNVSA LPKTHSLLTL QPSLLSHRVG AHLNYPMHAF MSKKPHEKSF    780
KLPQQSFTPL TASLPCDVHI VNLKVPQPLR FPHAEAASQR FAILLQRRGW DSSYCKRGGL    840
HCTTVGEEPV NLFYMFKDLS ALNVKATSLN LLHDDPEMLG YLEQIGDVAQ EGNVLISPME    900
IQAYKLDLQL PSLQEE* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd00451GH38N_AMII_euk3.0e-502185185+
cd11667GH38N_Man2A27.0e-1021250250+
cd11666GH38N_Man2A11.0e-1081250250+
cd10809GH38N_AMII_GMII_SfManIII_like3.0e-1482250249+
PLN02701PLN0270101909911+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004559alpha-mannosidase activity
GO:0005975carbohydrate metabolic process
GO:0006013mannose metabolic process
GO:0008270zinc ion binding
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
DDBJBAF19191.2019161161032Os06g0245700 [Oryza sativa Japonica Group]
GenBankEEC80313.1019162341150hypothetical protein OsI_22355 [Oryza sativa Indica Group]
GenBankEEE65435.1019161671083hypothetical protein OsJ_20797 [Oryza sativa Japonica Group]
RefSeqNP_001057277.1019162571173Os06g0245700 [Oryza sativa (japonica cultivar-group)]
RefSeqXP_002438145.1019162691184hypothetical protein SORBIDRAFT_10g008770 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1hxk_A029041541009A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin
PDB1hww_A029041541009A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin
PDB1hty_A029041541009A Chain A, Golgi Alpha-Mannosidase Ii
PDB1ps3_A029041841039A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
PDB3eju_A029041841039A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
JG9075722856118950
JG9046392846349170
JG8811532975108060
JG8704582756439170
CB662086281303100
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_002_00345.1.265.483Aquca_002_00345.1.265.483Aquca_006_00230.1Aquca_006_00257.5Aquca_006_00257.9
Aquca_006_00257.8Aquca_006_00257.7Aquca_006_00257.6Aquca_006_00257.4Aquca_006_00257.3
Aquca_006_00257.2Aquca_006_00257.1Aquca_043_00016.7Aquca_043_00016.8Aquca_043_00016.6
Aquca_043_00016.5Aquca_043_00016.4Aquca_043_00016.3Aquca_043_00016.2Aquca_043_00016.1
Aquca_043_00019.2Aquca_043_00019.1Aquca_043_00018.1Aquca_056_00071.1Aquca_002_00345.1.162.261
Aquca_002_00345.1.162.261
Arabidopsis lyrata488339488225497001484445
Arabidopsis thalianaAT5G14950.1AT5G66150.1AT5G13980.3AT5G13980.2AT5G13980.1
AT3G26720.2AT3G26720.1
Brachypodium distachyonBradi1g44550.1Bradi3g21117.1Bradi4g17327.1Bradi4g17317.1
Brassica rapaBra023496Bra006275Bra037183Bra006227Bra025225
Carica papayaevm.model.supercontig_6.275evm.model.supercontig_70.70evm.model.supercontig_2646.1evm.TU.contig_36966.1evm.model.supercontig_70.69
Capsella rubellaCarubv10000075mCarubv10002909mCarubv10027738mCarubv10016625m
Citrus clementinaCiclev10014083mCiclev10017635mCiclev10024829mCiclev10024800mCiclev10030627m
Ciclev10014156mCiclev10014160mCiclev10014123m
Citrus sinensisorange1.1g002547morange1.1g002518morange1.1g002134morange1.1g001061morange1.1g015028m
orange1.1g002366morange1.1g004057morange1.1g001910morange1.1g001850morange1.1g002764m
orange1.1g002170morange1.1g002162morange1.1g002383morange1.1g001963morange1.1g001813m
orange1.1g002938morange1.1g002542morange1.1g002064morange1.1g002056morange1.1g002046m
orange1.1g002036m
Cucumis sativusCucsa.339310.1Cucsa.043720.1Cucsa.188400.2Cucsa.188400.1
Eucalyptus grandisEucgr.J02166.1Eucgr.L01536.1Eucgr.J02456.1Eucgr.K02195.1Eucgr.J02455.3
Eucgr.J02455.2Eucgr.J02455.1Eucgr.I01600.1Eucgr.G01931.1Eucgr.J02460.1
Eucgr.J02454.1Eucgr.L01537.1Eucgr.J02457.1Eucgr.J02459.2Eucgr.J02459.1
Fragaria vescamrna28330.1-v1.0-hybridmrna14585.1-v1.0-hybridmrna01394.1-v1.0-hybrid.37.348mrna01394.1-v1.0-hybrid.37.348mrna06416.1-v1.0-hybrid.39.351
mrna06416.1-v1.0-hybrid.39.351mrna14589.1-v1.0-hybrid.71.344
Glycine maxGlyma13g04761.3Glyma13g04761.2Glyma19g01890.1Glyma13g04761.1Glyma02g05240.2
Glyma02g05240.1Glyma16g23600.1Glyma01g36980.1Glyma06g17270.1Glyma04g37790.1
Glyma19g27660.2Glyma19g27660.1Glyma16g05240.2Glyma16g05240.1
Gossypium raimondiiGorai.001G258600.2Gorai.001G258600.1Gorai.006G027500.1Gorai.003G008600.2Gorai.003G008600.1
Gorai.006G000300.3Gorai.006G000300.2Gorai.006G000300.1Gorai.012G082700.6Gorai.012G082700.9
Gorai.012G082700.8Gorai.012G082700.7Gorai.012G082700.5Gorai.012G082700.4Gorai.012G082700.3
Gorai.012G082700.2Gorai.012G082700.10Gorai.012G082700.1Gorai.003G116600.2Gorai.003G116600.1
Linum usitatissimumLus10014507Lus10015337.248.571Lus10015337.248.571Lus10032179Lus10039457
Lus10012578Lus10035111Lus10012577Lus10036074Lus10025960
Lus10014259Lus10041516Lus10015337.158.248Lus10015337.158.248
Malus domesticaMDP0000888429MDP0000267909MDP0000250936MDP0000139458MDP0000274501
MDP0000274500MDP0000409920MDP0000163211MDP0000657082MDP0000211018
Manihot esculentacassava4.1_000571mcassava4.1_001602mcassava4.1_000993mcassava4.1_000971mcassava4.1_000869m
cassava4.1_001123mcassava4.1_001106m
Medicago truncatulaMedtr4g071680.1Medtr6g008850.1Medtr8g075330.1Medtr7g084040.1Medtr3g098650.2
Medtr3g098650.1Medtr7g084030.1
Mimulus guttatusmgv1a000435mmgv1a000658mmgv1a000852mmgv1a000690m
Oryza sativaLOC_Os06g13650.2LOC_Os06g13650.1LOC_Os06g13650.3LOC_Os11g32260.2LOC_Os11g32260.1
LOC_Os10g05069.2LOC_Os10g05069.1LOC_Os10g05069.3
Panicum virgatumPavirv00027286mPavirv00024149mPavirv00025946mPavirv00065120m
Physcomitrella patensPp1s10_34V6.1Pp1s77_136V6.1Pp1s129_147V6.1
Phaseolus vulgarisPhvul.004G022500.1Phvul.003G264400.1Phvul.001G084400.1Phvul.002G107300.1Phvul.001G084700.1
Phvul.009G161600.1
Picea abiesMA_10434251g0010MA_879613g0010MA_4107059g0010
Populus trichocarpaPotri.017G073900.2Potri.017G073900.1Potri.001G350400.2Potri.001G350400.1Potri.014G143600.1
Potri.014G143600.2Potri.007G056300.1Potri.002G238200.2Potri.002G238200.1Potri.012G106500.2
Potri.012G106500.1
Prunus persicappa000458mppa021513mppa000707mppa000755mppa000717m
Ricinus communis29822.m00342029868.m00034130131.m00698230131.m00698130147.m014412
Setaria italicaSi005719mSi038673mSi025964mSi034056mSi025881m
Selaginella moellendorffii104910154366266756410022178241
Sorghum bicolorSb10g008770.1Sb01g026405.1Sb05g019600.1Sb01g026390.1
Thellungiella halophilaThhalv10012487mThhalv10012612mThhalv10012546mThhalv10003575mThhalv10003577m
Vitis viniferaGSVIVT01032586001GSVIVT01018752001GSVIVT01032988001GSVIVT01008340001GSVIVT01008642001
GSVIVT01032989001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)