CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00014582m
FamilyGH18
Protein PropertiesLength: 306 Molecular Weight: 32984 Isoelectric Point: 4.755
ChromosomeChromosome/Scaffold: 041495 Start: 4785 End: 5702
Description
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH18652202.5e-22
  TTATEPPTPTDGRFNIFWQSSVLSASAVASIKQSNPNVRVAVSLGGATVNGRPVFFNITSVDSWVQNAVASLTGIVQEYNLDGIDIDYEQFQVDPATFAE
  CVGRLVTALKSSGVIKFASIAPFDNADVQRHYQALWAGYGSVIDYVNFQFYAYSAS
Full Sequence
Protein Sequence     Length: 306     Download
MASSKLIAVA FLSSLVAAPT MTTAANSNLF RDYIGAIFNG VRFTDVPINP GVRFDFILAF    60
VIDYTTATEP PTPTDGRFNI FWQSSVLSAS AVASIKQSNP NVRVAVSLGG ATVNGRPVFF    120
NITSVDSWVQ NAVASLTGIV QEYNLDGIDI DYEQFQVDPA TFAECVGRLV TALKSSGVIK    180
FASIAPFDNA DVQRHYQALW AGYGSVIDYV NFQFYAYSAS TTEAQYVSHF DDQIANYPGG    240
NILASFTTAP TTTSVPINTS LNACRTLQSQ GKLYGIFIWA ADHSRSQGFR FDTQAQALLA    300
NAPSY* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd06548GH18_chitinase2.0e-69515359+
cd02871GH18_chitinase_D-like2.0e-7103215127+
cd00598GH18_chitinase-like2.0e-1196215129+
pfam00704Glyco_hydro_182.0e-1296217132+
cd06544GH18_narbonin3.0e-11729284257+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAO15366.10263022278AF330230_1 chitinase [Oryza sativa Japonica Group]
GenBankACF88258.102130424307unknown [Zea mays]
RefSeqNP_001064605.102630227303Os10g0416100 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001152001.102130424307chitinase 2 [Zea mays]
RefSeqXP_002467243.1013041308hypothetical protein SORBIDRAFT_01g021920 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3sim_B0292992273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB3sim_A0292992273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB1nar_A4e-27292844266A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
PDB4ac1_X0.00017327956255X Chain X, The Structure Of A Fungal Endo-Beta-N-Acetylglucosaminidase From Glycosyl Hydrolase Family 18, At 1.3a Resolution
PDB3qok_A0.00087721581225A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella Pneumoniae
Metabolic Pathways
Pathway NameReactionECProtein Name
chitin degradation II3.2.1.14-RXNEC-3.2.1.14chitinase
chitin degradation IIRXN-12623EC-3.2.1.14chitinase
chitin degradation IIRXN-12624EC-3.2.1.14chitinase
chitin degradation III (carnivorous plants)3.2.1.14-RXNEC-3.2.1.14chitinase
Signal Peptide
Cleavage Site
24
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
CT85376030613040
EE176053254212740
EE032877252212720
EE176407251212710
HO304470212953060
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_046_00008.1Aquca_014_00353.1Aquca_010_00636.1Aquca_027_00184.1
Brachypodium distachyonBradi3g26850.1Bradi3g26810.1Bradi3g26840.1
Carica papayaevm.model.supercontig_139.6
Citrus clementinaCiclev10028881mCiclev10003729m
Citrus sinensisorange1.1g021511morange1.1g046094m
Eucalyptus grandisEucgr.B02439.1Eucgr.J02106.1
Fragaria vescamrna14033.1-v1.0-hybrid.59.211mrna14019.1-v1.0-hybridmrna15882.1-v1.0-hybridmrna14034.1-v1.0-hybridmrna17899.1-v1.0-hybrid
mrna22564.1-v1.0-hybrid
Glycine maxGlyma11g15512.1Glyma09g21615.1Glyma13g40590.1
Gossypium raimondiiGorai.003G135700.1Gorai.003G135800.1Gorai.003G134100.1Gorai.003G129600.1Gorai.011G120000.1
Gorai.003G138400.1
Linum usitatissimumLus10005172
Malus domesticaMDP0000904158MDP0000885802MDP0000644797MDP0000312089
Manihot esculentacassava4.1_024209mcassava4.1_027074m
Medicago truncatulaMedtr6g079630.1Medtr2g096030.1
Mimulus guttatusmgv1a019267mmgv1a024804m
Oryza sativaLOC_Os10g28050.1LOC_Os10g28080.1
Panicum virgatumPavirv00061810mPavirv00031712m
Phaseolus vulgarisPhvul.011G069900.1
Picea abiesMA_38396g0010MA_10427109g0010
Populus trichocarpaPotri.012G102400.1Potri.015G100500.1Potri.015G100600.1Potri.001G341700.1
Prunus persicappa023801mppa009038mppa009096m
Ricinus communis30039.m00023530039.m000234
Setaria italicaSi022612mSi026720mSi028172mSi036765mSi036774m
Selaginella moellendorffii41118115493
Sorghum bicolorSb01g021920.1
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny