| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00014640m |
| Family | PL1 |
| Protein Properties | Length: 300 Molecular Weight: 31968.8 Isoelectric Point: 6.5016 |
| Chromosome | Chromosome/Scaffold: 041501 Start: 926 End: 2293 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 72 | 222 | 2.1e-33 |
| WITFTRDMTIRPKEELVVSLRKTVDGRGAAVVVGDGGACFVLHNVSNVIIHGLAVRGCKPAARTPLASASSGGGGLSDGDGITVFRSTDVWVDHCTLEAC TDGLIDVTDASTRVTLSNNLLRNHDKEMLLGHIYAIGGSASPTILSHGNRF | |||
| Full Sequence |
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| Protein Sequence Length: 300 Download |
| KYEHVTAPTH ARRRLGHRQP GGRLDDCWHC DPSWAANRQR LADCAIGDDD PAAPAPAPGT 60 LRYGLVQEEP LWITFTRDMT IRPKEELVVS LRKTVDGRGA AVVVGDGGAC FVLHNVSNVI 120 IHGLAVRGCK PAARTPLASA SSGGGGLSDG DGITVFRSTD VWVDHCTLEA CTDGLIDVTD 180 ASTRVTLSNN LLRNHDKEML LGHIYAIGGS ASPTILSHGN RFLADKDKEV TKRDGAPESE 240 WNTWTWISEG DMILNGAFFR SSGSPRPDVD TPSFAKSVSS VASMTASAGV LSCKEGYSC* 300 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 9.0e-7 | 158 | 202 | 53 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-21 | 112 | 222 | 164 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-23 | 110 | 224 | 169 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF19195.1 | 0 | 11 | 299 | 46 | 407 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
| GenBank | ABV32549.1 | 0 | 11 | 299 | 52 | 413 | pectase lyase [Prunus persica] |
| EMBL | CAA63496.1 | 0 | 11 | 299 | 36 | 398 | pectate lyase [Musa acuminata AAA Group] |
| RefSeq | NP_001055106.1 | 0 | 21 | 299 | 40 | 373 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441767.1 | 0 | 10 | 299 | 5 | 309 | hypothetical protein SORBIDRAFT_08g002030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 24 | 292 | 4 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 24 | 292 | 4 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00000002 | 79 | 202 | 56 | 168 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000005 | 108 | 202 | 147 | 258 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00008 | 82 | 203 | 71 | 203 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL903996 | 201 | 123 | 276 | 0 |
| FG606120 | 337 | 11 | 276 | 0 |
| EB428296 | 257 | 59 | 264 | 0 |
| FL903995 | 201 | 12 | 191 | 0 |
| FL903995 | 25 | 1 | 24 | 0.64 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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