CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00014744m
FamilyGT4
Protein PropertiesLength: 345 Molecular Weight: 38896.9 Isoelectric Point: 7.2882
ChromosomeChromosome/Scaffold: 040533 Start: 31 End: 2444
DescriptionUDP-Glycosyltransferase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT41473122.4e-25
  TAPPVLISVAQFRPEKAHGLQLEAFALALTRLDPRFPKPKLQFVGSCRNKEDLERLQKLKDRAFELHIDELVEFYKDISYMELVQLLGGAIAGLHSMTDE
  HFGIVVVEYMAAGAIPIAHKSAGPMMDIVLDEDGHQTGFLASKKEEFADAIIKVLSMSEQERQEMA
Full Sequence
Protein Sequence     Length: 345     Download
MIGQSLGSVY LAWEALTTFT PQFYFDTSGY AFTYPLARLF GCNVISYTHY PTISSDMVGR    60
VKQRSSMYNN DSRIAGSIWL SRCKILYYTI FSWLYGLVGS CAHLVMVNSS WTKSHIVNIW    120
KIPECTKRVY PPCDTSALQM LPLERSTAPP VLISVAQFRP EKAHGLQLEA FALALTRLDP    180
RFPKPKLQFV GSCRNKEDLE RLQKLKDRAF ELHIDELVEF YKDISYMELV QLLGGAIAGL    240
HSMTDEHFGI VVVEYMAAGA IPIAHKSAGP MMDIVLDEDG HQTGFLASKK EEFADAIIKV    300
LSMSEQERQE MAAASRKRAQ RFSGQRFHED FTEAVQPILL PREA* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd03801GT1_YqgM_like9.0e-2579336270+
pfam00534Glycos_transf_16.0e-25149318172+
cd03805GT1_ALG2_like2.0e-329327337+
cd03806GT1_ALG11_like2.0e-1671330332+
PLN02949PLN0294901344344+
Gene Ontology
GO TermDescription
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankABA99697.101339116454glycosyl transferase, group 1 family protein, expressed [Oryza sativa (japonica cultivar-group)]
GenBankACF88248.1013441344unknown [Zea mays]
GenBankEAY83676.1013391339hypothetical protein OsI_38900 [Oryza sativa Indica Group]
GenBankEAZ21019.10133972410hypothetical protein OsJ_36668 [Oryza sativa Japonica Group]
RefSeqXP_002443441.101344117460hypothetical protein SORBIDRAFT_08g019540 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3l01_B0.000002246334341426A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From Pyrococcus Abyssi
PDB3l01_A0.000002246334341426A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From Pyrococcus Abyssi
PDB3fro_C0.000003246334341426A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations
PDB3fro_B0.000003246334341426A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations
PDB3fro_A0.000003246334341426A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations
Metabolic Pathways
Pathway NameReactionECProtein Name
dolichyl-diphosphooligosaccharide biosynthesisRXN-5464EC-2.4.1.131GDP-Man:Man3GlcNAc2-PP-Dol α-1,2-mannosyltransferase
Transmembrane Domains
StartEnd
85107
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO84089932713270
GT050345322193400
JG947609275693430
BG838029288583450
JG860840236963310
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_045_00152.10Aquca_045_00152.3Aquca_045_00152.4Aquca_045_00152.7Aquca_045_00152.8
Aquca_045_00152.2Aquca_045_00152.1Aquca_013_00559.1Aquca_013_00559.3
Arabidopsis lyrata497266
Arabidopsis thalianaAT2G40190.1
Brachypodium distachyonBradi4g03380.2
Brassica rapaBra004979Bra017025
Capsella rubellaCarubv10023116m
Chlamydomonas reinhardtiig1252.t1
Citrus clementinaCiclev10031450m
Citrus sinensisorange1.1g012436m
Cucumis sativusCucsa.368390.1
Eucalyptus grandisEucgr.G03076.1
Glycine maxGlyma16g02840.1Glyma07g06210.1
Gossypium raimondiiGorai.013G017200.1
Linum usitatissimumLus10028977
Manihot esculentacassava4.1_010258m
Medicago truncatulaAC235758_14.1AC233112_1009.1
Mimulus guttatusmgv1a005920m
Oryza sativaLOC_Os12g39340.1
Panicum virgatumPavirv00065689m
Physcomitrella patensPp1s269_93V6.1
Phaseolus vulgarisPhvul.010G113600.1
Populus trichocarpaPotri.012G095500.1
Prunus persicappa005444m
Ricinus communis29814.m000733
Setaria italicaSi021990m
Selaginella moellendorffii80274
Sorghum bicolorSb08g019540.1
Thellungiella halophilaThhalv10016619m
Vitis viniferaGSVIVT01032791001
Volvox carteriVocar20008969m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny