Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014770m |
Family | GT8 |
Protein Properties | Length: 591 Molecular Weight: 67714.1 Isoelectric Point: 9.007 |
Chromosome | Chromosome/Scaffold: 040326 Start: 1096 End: 5543 |
Description | galacturonosyltransferase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 248 | 563 | 0 |
CLSMRLTIDYYLLPLEKRKFPRSENLENPSLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWL NSSYCPVLRQLESAAMKEYYFKADRPTTLSAGSSNLKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLTGLWDVDLNGNVNGAVETCGESF HRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLKEWKKKDITGIYHKWQNKNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDG AAVVHYNGNMKPWLEL |
Full Sequence |
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Protein Sequence Length: 591 Download |
MEAAATSTSP PIPRNHESPS WKTDDLVTDK GMDVYDKAKA ESSAAEHDLP TNNSPKDPDE 60 HQVDTAAKIA RRKLREKRRE KRAMDLLSKD DEARVKLENA AIERSKAVDS AVLGKYSIWR 120 KENENENSDT TVRLIRDQII MARVYSALAK SKNKSGLFQE LQTRIKESQR AVGEAAADAD 180 LHHSAPEKIR AMGQVLSKAR EEVYDCRAIT QRLRAMLQSA DEQVRSLKKQ STFLSQLAAK 240 TIPNSIHCLS MRLTIDYYLL PLEKRKFPRS ENLENPSLYH YALFSDNVLA ASVVVNSTIM 300 NAKEPEKHVF HLVTDKLNFG AMNMWFLLNP PGKATIHVEN VDEFKWLNSS YCPVLRQLES 360 AAMKEYYFKA DRPTTLSAGS SNLKYRNPKY LSMLNHLRFY LPEVYPKLDK ILFLDDDIVV 420 QKDLTGLWDV DLNGNVNGAV ETCGESFHRF DKYLNFSNPH IARNFDPNAC GWAYGMNIFD 480 LKEWKKKDIT GIYHKWQNKN EDRVLWKLGT LPPGLLTFYK LTHPLDKSWH VLGLGYNPSI 540 DRSEIDGAAV VHYNGNMKPW LELAMTKYRP YWTKYIKYDH PYIRGCNLSE * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02910 | PLN02910 | 0 | 86 | 590 | 505 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
PLN02829 | PLN02829 | 0 | 88 | 588 | 505 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 0 | 127 | 589 | 468 | + Probable galacturonosyltransferase | ||
PLN02523 | PLN02523 | 0 | 133 | 587 | 460 | + galacturonosyltransferase | ||
PLN02718 | PLN02718 | 0 | 128 | 590 | 466 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC84934.1 | 0 | 5 | 590 | 105 | 695 | hypothetical protein OsI_32147 [Oryza sativa Indica Group] |
RefSeq | NP_001063757.1 | 0 | 2 | 590 | 102 | 695 | Os09g0531900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002302550.1 | 0 | 3 | 590 | 46 | 644 | glycosyltransferase [Populus trichocarpa] |
RefSeq | XP_002462717.1 | 0 | 14 | 590 | 107 | 683 | hypothetical protein SORBIDRAFT_02g030820 [Sorghum bicolor] |
RefSeq | XP_002511763.1 | 0 | 14 | 590 | 132 | 710 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ga8_A | 0.0000005 | 369 | 560 | 45 | 252 | A Chain A, Structure Of A Cytoplasmic Domain Of Salmonella Inva |
PDB | 1g9r_A | 0.0000005 | 369 | 560 | 45 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ss9_A | 0.000003 | 369 | 516 | 45 | 196 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO842648 | 328 | 264 | 591 | 0 |
GT042159 | 323 | 267 | 589 | 0 |
HO795725 | 457 | 133 | 589 | 0 |
GO873566 | 314 | 213 | 526 | 0 |
GO873566 | 31 | 518 | 548 | 0.054 |
Sequence Alignments (This image is cropped. Click for full image.) |
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