Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014813m |
Family | GH28 |
Protein Properties | Length: 388 Molecular Weight: 41416.6 Isoelectric Point: 6.0923 |
Chromosome | Chromosome/Scaffold: 041785 Start: 3 End: 2859 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 18 | 359 | 0 |
GGAELYVPPGVWLTGPFNLTSRMTLFLARGAVIRATQDTPSWPLIEPLPSYGRGRELPGGRYISLIHGSGLQDVVITGENGTIDGQGSVWWDMWKKGTLP YTRPHLLELMSSSDIIVSNVTFQDSPFWNIHPVYCSNVVIRNVTVLAPHDSPNTDGIDPDSSSNVCIEDCYISTGDDSIAIKSGWDEYGISYGHPSSDIT VRRITGSSPFAGFAVGSETSGGVQNVLAEHLNFFGSGYGIHIKTNTGRGGFIRNVTISDVTLDNVRYGLRIAGDVGDHPDDRYNRSALPVVDALTIKNIQ GQNIKEAGLIKGIANSAFSRICLSNVKLSGGTPVRPWKCEAV |
Full Sequence |
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Protein Sequence Length: 388 Download |
TGAFARAVAS VERLRAPGGA ELYVPPGVWL TGPFNLTSRM TLFLARGAVI RATQDTPSWP 60 LIEPLPSYGR GRELPGGRYI SLIHGSGLQD VVITGENGTI DGQGSVWWDM WKKGTLPYTR 120 PHLLELMSSS DIIVSNVTFQ DSPFWNIHPV YCSNVVIRNV TVLAPHDSPN TDGIDPDSSS 180 NVCIEDCYIS TGDDSIAIKS GWDEYGISYG HPSSDITVRR ITGSSPFAGF AVGSETSGGV 240 QNVLAEHLNF FGSGYGIHIK TNTGRGGFIR NVTISDVTLD NVRYGLRIAG DVGDHPDDRY 300 NRSALPVVDA LTIKNIQGQN IKEAGLIKGI ANSAFSRICL SNVKLSGGTP VRPWKCEAVT 360 GGALDVQPSP CTELTSTSGT SFCTNLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-24 | 95 | 349 | 263 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 1.0e-24 | 83 | 283 | 205 | + polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-33 | 88 | 376 | 301 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-39 | 83 | 363 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-57 | 1 | 309 | 341 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY74990.1 | 0 | 1 | 387 | 59 | 445 | hypothetical protein OsI_02888 [Oryza sativa Indica Group] |
GenBank | EAY99223.1 | 0 | 1 | 385 | 64 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
RefSeq | NP_001056466.1 | 0 | 1 | 385 | 64 | 448 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141464.1 | 0 | 1 | 387 | 60 | 446 | hypothetical protein LOC100273574 [Zea mays] |
RefSeq | XP_002455965.1 | 0 | 1 | 387 | 61 | 447 | hypothetical protein SORBIDRAFT_03g028140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 8.40779e-45 | 3 | 349 | 46 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8.40779e-45 | 3 | 349 | 46 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8.40779e-45 | 3 | 349 | 46 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8.40779e-45 | 3 | 349 | 46 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-21 | 28 | 346 | 51 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO864447 | 300 | 89 | 388 | 0 |
GO837914 | 288 | 80 | 367 | 0 |
EG383332 | 277 | 58 | 334 | 0 |
EB670814 | 269 | 109 | 377 | 0 |
HO299718 | 244 | 128 | 371 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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