Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014937m |
Family | CBM43 |
Protein Properties | Length: 539 Molecular Weight: 56568 Isoelectric Point: 4.8718 |
Chromosome | Chromosome/Scaffold: 040772 Start: 276 End: 5713 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 392 | 473 | 2.9e-32 |
CVAADDADEKAVQAAMDWACGPGRADCTAIQPGQGCYMPDDVRSHASYAFDAYYQSQARAAGSCYFQGAGMVTTTDPSHDNC | |||
GH17 | 41 | 373 | 0 |
VGVTIGTAVTNLLSPSDLADFLRAQHITRVRLYDADPRLLSALATAGVRAIVGVPNDELLALGSSPATATAWVARRVLPFAGVNSSTPAVISAIAVGDEV PTALPSALPVLLPAIRSLAAALAAANLSSSIPVSTPLPFSVVEDPFPPSQAFFNQTLAKSLVAPLLAHLASTSAPLMLNLYPYYSLMQSKGVIPLDNALF RPLPPSLEMVDPNTLLHYTNVFDAMLDAVHVAVQNLNVSGGGGVPILVTETGWPSYGDRRAEPYASKDNADAYNSNLIKHVLEDKPGTPMEPGAAAQSSA YVYELFNEDLRPGPVSEANWGLFYGNGTPVYLL |
Full Sequence |
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Protein Sequence Length: 539 Download |
MRSRSRGGSG SSLLTPLLFL LLSLHCSPVL VSAAGSGEPY VGVTIGTAVT NLLSPSDLAD 60 FLRAQHITRV RLYDADPRLL SALATAGVRA IVGVPNDELL ALGSSPATAT AWVARRVLPF 120 AGVNSSTPAV ISAIAVGDEV PTALPSALPV LLPAIRSLAA ALAAANLSSS IPVSTPLPFS 180 VVEDPFPPSQ AFFNQTLAKS LVAPLLAHLA STSAPLMLNL YPYYSLMQSK GVIPLDNALF 240 RPLPPSLEMV DPNTLLHYTN VFDAMLDAVH VAVQNLNVSG GGGVPILVTE TGWPSYGDRR 300 AEPYASKDNA DAYNSNLIKH VLEDKPGTPM EPGAAAQSSA YVYELFNEDL RPGPVSEANW 360 GLFYGNGTPV YLLHVSGAGG FLANDTTDRS FCVAADDADE KAVQAAMDWA CGPGRADCTA 420 IQPGQGCYMP DDVRSHASYA FDAYYQSQAR AAGSCYFQGA GMVTTTDPSH DNCLFPGSKR 480 LGNDSKSGSA NNATTPTSDA EGSAIWRLRT GRENGFSLFL RLLLSIAVVI VTDSNFWT* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-7 | 272 | 366 | 97 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-23 | 390 | 462 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-41 | 390 | 475 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-66 | 41 | 371 | 331 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC83956.1 | 0 | 38 | 475 | 42 | 480 | putative beta-1,3-glucanase [Oryza sativa Japonica Group] |
GenBank | EEC82125.1 | 0 | 38 | 538 | 40 | 538 | hypothetical protein OsI_26155 [Oryza sativa Indica Group] |
RefSeq | NP_001059752.1 | 0 | 38 | 538 | 42 | 540 | Os07g0510200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152289.1 | 0 | 27 | 538 | 34 | 544 | glucan endo-1,3-beta-glucosidase 3 [Zea mays] |
RefSeq | XP_002518468.1 | 0 | 38 | 530 | 47 | 528 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 41 | 373 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 41 | 374 | 1 | 305 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 41 | 374 | 1 | 305 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_B | 4.2039e-45 | 41 | 376 | 3 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_A | 4.2039e-45 | 41 | 376 | 3 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |