Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015019m |
Family | GH5 |
Protein Properties | Length: 465 Molecular Weight: 50935.3 Isoelectric Point: 10.1969 |
Chromosome | Chromosome/Scaffold: 041983 Start: 839 End: 4126 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 84 | 408 | 1.3e-31 |
NGNPFFANGFNAYWLMSFGADPARRGKVTSALGQAAAAGLSVARTWAFSDGGSNALQYSPGRYNENTFQGLDFVLSEARKHGIKMILSLVNSYDSFGGRK QYVQWAREQGQSIGSDDEFFTNPVVKGFYKNHIKTVLTRVNTITGVAYKDDPTIMAWELMNEPRCQSDLSGRTLQSWIAEMAAHVKSIDAAHLLEAGLEG FYGASTPSRAAAANPSGYQLGTDFVANNRAPGIDFATVHAYPDQWLPGLDAPSQLRFLGAWLDAHVADARDALRKPLLVAEFGRSRRDPGYSGDQRDAVF GTVYGKVYESARAGGPAAGALFWQL |
Full Sequence |
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Protein Sequence Length: 465 Download |
FRVSFFFLTS SHHHYCWPSK RREIEIRERQ QRRQATKARV HRRMRRLRGA LALLLLLCIH 60 GGRQGAEAGR DGFVRVQGTH FVLNGNPFFA NGFNAYWLMS FGADPARRGK VTSALGQAAA 120 AGLSVARTWA FSDGGSNALQ YSPGRYNENT FQGLDFVLSE ARKHGIKMIL SLVNSYDSFG 180 GRKQYVQWAR EQGQSIGSDD EFFTNPVVKG FYKNHIKTVL TRVNTITGVA YKDDPTIMAW 240 ELMNEPRCQS DLSGRTLQSW IAEMAAHVKS IDAAHLLEAG LEGFYGASTP SRAAAANPSG 300 YQLGTDFVAN NRAPGIDFAT VHAYPDQWLP GLDAPSQLRF LGAWLDAHVA DARDALRKPL 360 LVAEFGRSRR DPGYSGDQRD AVFGTVYGKV YESARAGGPA AGALFWQLLA EGMESYGDGY 420 EVVLGQASST AGVIATQSRR LQGLARAFAR ARKPKQGQTG QGGN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3934 | COG3934 | 0.009 | 212 | 417 | 230 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 0.007 | 233 | 366 | 141 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 0.001 | 127 | 247 | 121 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
COG3934 | COG3934 | 8.0e-24 | 127 | 420 | 299 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF69949.1 | 0 | 57 | 453 | 12 | 402 | (1-4)-beta-mannan endohydrolase (mannan endo-1,4-beta-mannosidase), putative [Musa acuminata] |
GenBank | EEC71222.1 | 0 | 73 | 458 | 37 | 425 | hypothetical protein OsI_03157 [Oryza sativa Indica Group] |
RefSeq | NP_001145882.1 | 0 | 59 | 456 | 16 | 414 | hypothetical protein LOC100279398 [Zea mays] |
Swiss-Prot | Q0JKM9 | 0 | 73 | 458 | 37 | 425 | MAN1_ORYSJ RecName: Full=Mannan endo-1,4-beta-mannosidase 1; AltName: Full=Beta-mannanase 1; AltName: Full=Endo-beta-1,4-mannanase 1; AltName: Full=OsMAN1; Flags: Precursor |
RefSeq | XP_002456093.1 | 0 | 61 | 453 | 20 | 417 | hypothetical protein SORBIDRAFT_03g030340 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 70 | 445 | 3 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 77 | 420 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 77 | 420 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 77 | 420 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 77 | 420 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR963780 | 273 | 127 | 396 | 0 |
FL837557 | 231 | 196 | 426 | 0 |
FL748943 | 226 | 168 | 393 | 0 |
DY296355 | 337 | 127 | 463 | 0 |
FL748943 | 32 | 398 | 429 | 0.0000000009 |
Sequence Alignments (This image is cropped. Click for full image.) |
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