| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00015111m |
| Family | GH28 |
| Protein Properties | Length: 196 Molecular Weight: 20330.2 Isoelectric Point: 9.1309 |
| Chromosome | Chromosome/Scaffold: 0405946 Start: 5 End: 808 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 64 | 195 | 6.2e-29 |
| TSACRATGSATVLIPKGDYLVGPLNFSGPCKAAITIQLDGTLLGSNDLAKYKSSWIEVSHVENIVISGAGTLDGQGTTVYPKGKTPMDYKALPNTLVLFY VTNATVSGIRLLNAKFFHINIDTSKDITVKDV | |||
| Full Sequence |
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| Protein Sequence Length: 196 Download |
| MASANNALRV FFILTVVCAA RAAPAPGGGA KATGGAGESF DITKLGAKSD GKTDSTKALQ 60 DAWTSACRAT GSATVLIPKG DYLVGPLNFS GPCKAAITIQ LDGTLLGSND LAKYKSSWIE 120 VSHVENIVIS GAGTLDGQGT TVYPKGKTPM DYKALPNTLV LFYVTNATVS GIRLLNAKFF 180 HINIDTSKDI TVKDVS |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-20 | 38 | 196 | 166 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-21 | 40 | 195 | 158 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-23 | 42 | 195 | 163 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-27 | 67 | 195 | 130 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-37 | 40 | 190 | 155 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG32118.1 | 0 | 1 | 196 | 1 | 204 | exopolygalacturonase precursor [Zea mays] |
| GenBank | ACG34252.1 | 0 | 2 | 196 | 3 | 216 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001130136.1 | 0 | 1 | 196 | 1 | 204 | hypothetical protein LOC100191230 [Zea mays] |
| RefSeq | NP_001141594.1 | 0 | 2 | 196 | 3 | 216 | hypothetical protein LOC100273711 [Zea mays] |
| RefSeq | XP_002455693.1 | 0 | 1 | 196 | 1 | 201 | hypothetical protein SORBIDRAFT_03g021050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.000001 | 41 | 196 | 29 | 230 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.000001 | 41 | 196 | 29 | 230 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.000001 | 41 | 196 | 29 | 230 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.000001 | 41 | 196 | 29 | 230 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1rmg_A | 0.000005 | 30 | 196 | 11 | 167 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 22 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL760885 | 196 | 1 | 196 | 0 |
| FL777109 | 196 | 1 | 196 | 0 |
| FL815556 | 196 | 1 | 196 | 0 |
| FL838153 | 196 | 1 | 196 | 0 |
| FL806668 | 196 | 1 | 196 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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