| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00015197m |
| Family | GH3 |
| Protein Properties | Length: 627 Molecular Weight: 67207.4 Isoelectric Point: 5.5679 |
| Chromosome | Chromosome/Scaffold: 041251 Start: 1891 End: 4902 |
| Description | beta-xylosidase 3 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 108 | 368 | 0 |
| GAPRVGLPPYRWWGEALHGVSDVGPGGTWFGDVVPGATSFPLVINAAAAFNESLWRAVGTAVSTEVRAMYNLGHAELTYWSPNINVVRDPRWGRASETPG EDPFLVGRYAVNFVRGMQDVAGGGGAAAAADPFARPIKVSSCCKHFAAYDVDAWFKADRLTFDAQVQERDMVETFERPFEMCIRDGDASCVMCSYNRVNG IPACADARLLTETVREQWQLHGYIVSDCDSVRVMVRDAKWLNYTGVEATAAAMKAGLDLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 627 Download |
| MPLAAMASAS SFLSRCRPTL AVAVALLCAI AAASSAAGGG AGGRGPIATA GKNYTRVCDP 60 ARFAALGLDA SRFRYCDASL PYADRVRDLV GRMTLEEKVR NLGDQAEGAP RVGLPPYRWW 120 GEALHGVSDV GPGGTWFGDV VPGATSFPLV INAAAAFNES LWRAVGTAVS TEVRAMYNLG 180 HAELTYWSPN INVVRDPRWG RASETPGEDP FLVGRYAVNF VRGMQDVAGG GGAAAAADPF 240 ARPIKVSSCC KHFAAYDVDA WFKADRLTFD AQVQERDMVE TFERPFEMCI RDGDASCVMC 300 SYNRVNGIPA CADARLLTET VREQWQLHGY IVSDCDSVRV MVRDAKWLNY TGVEATAAAM 360 KAGLDLDCGM FWEGARDFFT TYGVDAVRQG KIKEADVDNA LTNVYLTLMR LGFFDGMPEF 420 ESLGAGDVCS KDHKELAADA ARQGMVLLKN DARRLPVDPN KIKSVSLVGL LEHINATDVM 480 LGDYRGKPCR VVTPYNAIRK MVKATYVHAC DNGACDTAGG MGRAARTAKI ADATIVIAGL 540 NMSVERESND REDLLLPWNQ TGWINAVAEA SPYPIVLVIM SAGGVDVSFA QNNPKIGSIV 600 WAGYPGEEGG TAIADVLFGR HNPGAY* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam01915 | Glyco_hydro_3_C | 3.0e-39 | 445 | 624 | 186 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. |
| COG1472 | BglX | 8.0e-47 | 89 | 488 | 406 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
| PRK15098 | PRK15098 | 5.0e-47 | 139 | 623 | 520 | + beta-D-glucoside glucohydrolase; Provisional |
| pfam00933 | Glyco_hydro_3 | 6.0e-54 | 97 | 405 | 310 | + Glycosyl hydrolase family 3 N terminal domain. |
| PLN03080 | PLN03080 | 0 | 70 | 624 | 561 | + Probable beta-xylosidase; Provisional |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB55751.1 | 0 | 42 | 624 | 31 | 610 | putative alpha-L-arabinofuranosidase/beta-D- xylosidase isoenzyme ARA-I [Oryza sativa Japonica Group] |
| GenBank | EEE54394.1 | 0 | 42 | 624 | 31 | 568 | hypothetical protein OsJ_01415 [Oryza sativa Japonica Group] |
| RefSeq | NP_001068511.1 | 0 | 20 | 623 | 20 | 610 | Os11g0696400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146482.1 | 0 | 46 | 624 | 51 | 628 | hypothetical protein LOC100280070 [Zea mays] |
| RefSeq | XP_002455502.1 | 0 | 6 | 624 | 1 | 617 | hypothetical protein SORBIDRAFT_03g012290 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 3e-34 | 187 | 623 | 128 | 561 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3u48_A | 3e-34 | 187 | 623 | 128 | 561 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3u4a_B | 1e-33 | 187 | 623 | 128 | 561 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3u4a_A | 1e-33 | 187 | 623 | 128 | 561 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 4i3g_B | 6e-28 | 82 | 469 | 50 | 398 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
