Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015323m |
Family | GH28 |
Protein Properties | Length: 298 Molecular Weight: 31045.1 Isoelectric Point: 7.1729 |
Chromosome | Chromosome/Scaffold: 066325 Start: 3539 End: 4833 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 16 | 285 | 0 |
SSVSGPGTLDGQGTAVYPKGKTPMDSKALPNTLVLFYVTNATVSGIRLLNAKFFHINIDTSKDITVKDVSITAPADVENTDGVHVGGSSKVSITNATIGT GDDCVSIGPGSSGVTVTGITCGPGQGISVGCLGRYKDEKDVTDVTVKDCVLKGTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYYCPEKV CPGKRSNSSNVSVKDVTFRNITGTSSTPEAISLLCSDAQPCSGVQLVDVNVEYAGKNNKTMAVCSNAKGT |
Full Sequence |
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Protein Sequence Length: 298 Download |
KYKASLDPRC RTSRTSSVSG PGTLDGQGTA VYPKGKTPMD SKALPNTLVL FYVTNATVSG 60 IRLLNAKFFH INIDTSKDIT VKDVSITAPA DVENTDGVHV GGSSKVSITN ATIGTGDDCV 120 SIGPGSSGVT VTGITCGPGQ GISVGCLGRY KDEKDVTDVT VKDCVLKGTT NGVRIKSYED 180 AESVLTASHL TFENIRMEEV ANPIIIDQYY CPEKVCPGKR SNSSNVSVKD VTFRNITGTS 240 STPEAISLLC SDAQPCSGVQ LVDVNVEYAG KNNKTMAVCS NAKGTAKGSL EALACLV* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-48 | 22 | 296 | 276 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-54 | 20 | 290 | 275 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-54 | 17 | 296 | 285 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-76 | 1 | 286 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-81 | 17 | 283 | 269 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG32118.1 | 0 | 18 | 297 | 138 | 415 | exopolygalacturonase precursor [Zea mays] |
GenBank | ACG34252.1 | 0 | 18 | 297 | 150 | 428 | exopolygalacturonase precursor [Zea mays] |
RefSeq | NP_001130136.1 | 0 | 18 | 297 | 138 | 416 | hypothetical protein LOC100191230 [Zea mays] |
RefSeq | NP_001141594.1 | 0 | 18 | 297 | 150 | 428 | hypothetical protein LOC100273711 [Zea mays] |
RefSeq | XP_002455693.1 | 0 | 1 | 296 | 119 | 412 | hypothetical protein SORBIDRAFT_03g021050 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-21 | 16 | 237 | 111 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-18 | 2 | 261 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 2 | 261 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 2 | 261 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 2 | 261 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL781921 | 241 | 18 | 258 | 0 |
DV551249 | 232 | 67 | 298 | 0 |
FL820847 | 201 | 29 | 229 | 0 |
DV550398 | 231 | 38 | 268 | 0 |
FL820847 | 42 | 229 | 270 | 4e-18 |
Sequence Alignments (This image is cropped. Click for full image.) |
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