Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015364m |
Family | GH3 |
Protein Properties | Length: 615 Molecular Weight: 66618 Isoelectric Point: 5.48 |
Chromosome | Chromosome/Scaffold: 063613 Start: 970 End: 3904 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 90 | 328 | 0 |
LSSRLGVPILYGTDAVHGHNNVYGATVFPHNVGLGAARDPELLRKIGEATALEVRATGIHWTFAPCVAICRDPRWGRCYESYSEDPETVRSSTTIVAGLQ GQPPADHPHGYPFLASVREKVLACAKHFVGDGGTDRGINEGNTICSYDDLENIHMEPYLDCIAQGVATVMASHSKWNGERLHSCRYLLTDVLKGKLGFKG FVISDWEGIDKICEPRVAQGSDYRYCIKQSVNAGMDMIM |
Full Sequence |
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Protein Sequence Length: 615 Download |
MATAAQGEAL LPPYKDASAP VETRVRDLLG RMTLREKAAQ MAQVERTVAS ARALAELGAG 60 SVLNGGGSAP GDRSPACWTG MVDGLQRLAL SSRLGVPILY GTDAVHGHNN VYGATVFPHN 120 VGLGAARDPE LLRKIGEATA LEVRATGIHW TFAPCVAICR DPRWGRCYES YSEDPETVRS 180 STTIVAGLQG QPPADHPHGY PFLASVREKV LACAKHFVGD GGTDRGINEG NTICSYDDLE 240 NIHMEPYLDC IAQGVATVMA SHSKWNGERL HSCRYLLTDV LKGKLGFKGF VISDWEGIDK 300 ICEPRVAQGS DYRYCIKQSV NAGMDMIMIP YRFEEFLENL VFLVETWEIP MSRIDDAVER 360 ILRVKFISGV FEHPFSDPSL LDIVGCKEHR LLAREAVRKS IVLLKNGKNQ KEPFLPLATN 420 VKRILVTGTH ADDIGLQCGG WTVGWNGDSG KVTPGTSILD AIKESVGVQT EVVYEACATE 480 ATIATGEFSY AVVVVGEVPY AESVGDRTDL SIPFNGSDLI TRVASTIPTL VIVVSGRPLD 540 IETQVLEKID ALVAAWLPGT EGMGIADCLF GHHDFVGTLP VTWHRSVDQL PLNAGHANYD 600 PLFPVGYGLK MFEK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 5.0e-40 | 13 | 601 | 641 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-50 | 401 | 609 | 227 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 9.0e-78 | 25 | 609 | 666 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 1.0e-79 | 33 | 364 | 337 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 1.0e-89 | 32 | 466 | 444 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79317.1 | 0 | 20 | 612 | 13 | 603 | hypothetical protein OsI_20160 [Oryza sativa Indica Group] |
GenBank | EEE63918.1 | 0 | 20 | 612 | 13 | 603 | hypothetical protein OsJ_18743 [Oryza sativa Japonica Group] |
RefSeq | NP_001145784.1 | 0 | 1 | 612 | 1 | 612 | hypothetical protein LOC100279291 [Zea mays] |
RefSeq | NP_190284.1 | 0 | 14 | 610 | 10 | 604 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | XP_002279757.1 | 0 | 14 | 614 | 117 | 716 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 14 | 609 | 5 | 597 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1x38_A | 0 | 14 | 609 | 5 | 597 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1lq2_A | 0 | 14 | 609 | 5 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 14 | 609 | 5 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 14 | 609 | 5 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO800387 | 342 | 175 | 516 | 0 |
GO876678 | 322 | 239 | 560 | 0 |
HO784016 | 432 | 60 | 489 | 0 |
JG891890 | 245 | 371 | 615 | 0 |
HO784016 | 48 | 14 | 61 | 0.004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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