| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00015614m |
| Family | GH17 |
| Protein Properties | Length: 334 Molecular Weight: 35715.6 Isoelectric Point: 9.6242 |
| Chromosome | Chromosome/Scaffold: 060832 Start: 2551 End: 4095 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH17 | 32 | 331 | 0 |
| GVCYSVTGDNLPPSAEVVQLYKSRNIHAMRIFRPDQGTLAALRGSGIGLILARGRAAAAIVWVHDNVRAYYPDVLILYIAVGNEVPAGDAGLVLLPAMRN VHAALVAAGLSSSIKVSTADGRDRRLLPPSRGVFSHDAQRHMVPVARFLADTGAPLLANVYPYFAYRDNPRDISLGYATFRPGTTTVRDSGSGLTYTNLL DAMVDAIYAALEKAGAPSVRIVVSETGWPSAGGFAATVDNARKYNQAAIDHVRRGTPKRPGVLQTYVFAMLNENQKPGDPTEKNFGLFYPDMQPVYPITF | |||
| Full Sequence |
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| Protein Sequence Length: 334 Download |
| MASAAAAGHL TSEPGERTAA ASERRPQRCA HGVCYSVTGD NLPPSAEVVQ LYKSRNIHAM 60 RIFRPDQGTL AALRGSGIGL ILARGRAAAA IVWVHDNVRA YYPDVLILYI AVGNEVPAGD 120 AGLVLLPAMR NVHAALVAAG LSSSIKVSTA DGRDRRLLPP SRGVFSHDAQ RHMVPVARFL 180 ADTGAPLLAN VYPYFAYRDN PRDISLGYAT FRPGTTTVRD SGSGLTYTNL LDAMVDAIYA 240 ALEKAGAPSV RIVVSETGWP SAGGFAATVD NARKYNQAAI DHVRRGTPKR PGVLQTYVFA 300 MLNENQKPGD PTEKNFGLFY PDMQPVYPIT FPN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-144 | 31 | 331 | 313 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD88028.1 | 0 | 31 | 332 | 10 | 321 | endo-1,3-beta-glucanase [Oryza sativa Japonica Group] |
| GenBank | EAY77193.1 | 0 | 31 | 332 | 5 | 316 | hypothetical protein OsI_05162 [Oryza sativa Indica Group] |
| GenBank | EAZ14817.1 | 0 | 31 | 332 | 5 | 316 | hypothetical protein OsJ_04744 [Oryza sativa Japonica Group] |
| RefSeq | XP_002441397.1 | 0 | 26 | 333 | 14 | 336 | hypothetical protein SORBIDRAFT_09g025890 [Sorghum bicolor] |
| RefSeq | XP_002456922.1 | 0 | 31 | 333 | 5 | 317 | hypothetical protein SORBIDRAFT_03g045630 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 32 | 331 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 32 | 331 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 32 | 331 | 2 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 32 | 331 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 32 | 331 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR739897 | 310 | 32 | 329 | 0 |
| DR739798 | 300 | 32 | 319 | 0 |
| HX191066 | 275 | 29 | 290 | 0 |
| CT855783 | 317 | 30 | 331 | 0 |
| HX191091 | 231 | 107 | 334 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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