y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015859m |
Family | GH14 |
Protein Properties | Length: 426 Molecular Weight: 44560.9 Isoelectric Point: 5.2176 |
Chromosome | Chromosome/Scaffold: 061601 Start: 4 End: 1369 |
Description | beta-amylase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 80 | 425 | 0 |
FVGLPADVVVSDGRGVSRPRAVSAALRALRLLGVDGVELPVSWAAVQPGSGGWFEWAGYRAVASMVRDAGLDLRVSLRTDGDALPEWVADAAAADPDVLF TDRNGRRREGCLSFAVDELPVLVGKSPLEAYEAFFRSFADEFEDLLGSTIAGVTVSLGPNGELRYPSYPPGSNGADGYSGTGEFQCYDKYTLARLKRHAE SSGQPLWGLSGPHDGPRYDESPESSAFFREPGGSWKSAYGEFFLSWYAGELLAHGDRVLAAASRAFGGKPVELSARVPLLRGSRPAEAAAGLHGGYGPVA EMFARHGCTVIACGVEARLDAPAEEVLARVEAACAEHGARLAAESA |
Full Sequence |
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Protein Sequence Length: 426 Download |
MEAVLMQRAA ARWRCVGEAA TGGAGQQPAG VVRLGAARRA PGGAVRASRL GPVRAHVSEE 60 RSREAAAVAE GEGEGAVGLF VGLPADVVVS DGRGVSRPRA VSAALRALRL LGVDGVELPV 120 SWAAVQPGSG GWFEWAGYRA VASMVRDAGL DLRVSLRTDG DALPEWVADA AAADPDVLFT 180 DRNGRRREGC LSFAVDELPV LVGKSPLEAY EAFFRSFADE FEDLLGSTIA GVTVSLGPNG 240 ELRYPSYPPG SNGADGYSGT GEFQCYDKYT LARLKRHAES SGQPLWGLSG PHDGPRYDES 300 PESSAFFREP GGSWKSAYGE FFLSWYAGEL LAHGDRVLAA ASRAFGGKPV ELSARVPLLR 360 GSRPAEAAAG LHGGYGPVAE MFARHGCTVI ACGVEARLDA PAEEVLARVE AACAEHGARL 420 AAESAP 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 2.0e-46 | 122 | 411 | 314 | + beta-amylase | ||
PLN02801 | PLN02801 | 5.0e-48 | 120 | 425 | 335 | + beta-amylase | ||
PLN02161 | PLN02161 | 4.0e-50 | 120 | 392 | 300 | + beta-amylase | ||
PLN00197 | PLN00197 | 3.0e-60 | 120 | 425 | 334 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 2.0e-65 | 122 | 425 | 331 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0004565 | beta-galactosidase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95933.1 | 0 | 1 | 425 | 1 | 429 | Glycosyl hydrolase family 14 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EAZ05063.1 | 0 | 79 | 425 | 77 | 444 | hypothetical protein OsI_27252 [Oryza sativa Indica Group] |
RefSeq | NP_001060573.1 | 0 | 79 | 425 | 77 | 444 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151271.1 | 0 | 12 | 426 | 19 | 442 | beta-amylase [Zea mays] |
RefSeq | XP_002467860.1 | 0 | 12 | 420 | 16 | 428 | hypothetical protein SORBIDRAFT_01g035370 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1q6g_A | 0 | 77 | 425 | 12 | 382 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 2dqx_A | 0 | 77 | 425 | 12 | 382 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
PDB | 1q6d_A | 0 | 77 | 425 | 12 | 382 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1wdp_A | 0 | 77 | 425 | 12 | 382 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1q6c_A | 0 | 77 | 425 | 12 | 382 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL869001 | 249 | 179 | 426 | 0 |
FL749726 | 248 | 179 | 426 | 0 |
FL890384 | 189 | 239 | 426 | 0 |
FL759360 | 178 | 179 | 356 | 0 |
FE627453 | 178 | 223 | 399 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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