Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015902m |
Family | GH17 |
Protein Properties | Length: 278 Molecular Weight: 29142.2 Isoelectric Point: 9.3061 |
Chromosome | Chromosome/Scaffold: 064594 Start: 3194 End: 4248 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 81 | 274 | 0 |
AALVVLPAMRNVHAALVAAGLSSSIKVSTAVRMDVIADSYLPPSRGVFSHDVQRHMVPVARFLADTGAPLLANVYPYFAHRDNPRDISLSYAAFRPGTTV RDSGTGLTYTNLLDAMVDAIYAALEKAGAPNVRVVVSETGGPSGGFAATVAAIDHVRRGTPKSPGVLETYVFAMFNENQKPGDRTEKNFGLFST |
Full Sequence |
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Protein Sequence Length: 278 Download |
MGGAHGVCYG VTGDNLPSRA EVVQLYKSRN IHAMRIFRPD QETLAAMRGS GIGLILGVDG 60 VGAVRALANS GAAAIVPAGD AALVVLPAMR NVHAALVAAG LSSSIKVSTA VRMDVIADSY 120 LPPSRGVFSH DVQRHMVPVA RFLADTGAPL LANVYPYFAH RDNPRDISLS YAAFRPGTTV 180 RDSGTGLTYT NLLDAMVDAI YAALEKAGAP NVRVVVSETG GPSGGFAATV AAIDHVRRGT 240 PKSPGVLETY VFAMFNENQK PGDRTEKNFG LFSTRTCS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00332 | Glyco_hydro_17 | 1.0e-109 | 5 | 273 | 303 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL40191.1 | 0 | 1 | 273 | 1 | 304 | AF337174_1 endo-1,3-beta-glucanase [Oryza sativa] |
GenBank | EAY77194.1 | 0 | 1 | 273 | 1 | 304 | hypothetical protein OsI_05163 [Oryza sativa Indica Group] |
RefSeq | NP_001045385.1 | 0 | 1 | 272 | 1 | 303 | Os01g0946600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001045386.1 | 0 | 1 | 273 | 1 | 304 | Os01g0946700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002441397.1 | 0 | 3 | 272 | 21 | 322 | hypothetical protein SORBIDRAFT_09g025890 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 6 | 273 | 2 | 295 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 6 | 273 | 2 | 295 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 6 | 272 | 3 | 303 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 6 | 272 | 3 | 303 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_B | 0 | 6 | 272 | 3 | 303 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CT855783 | 300 | 1 | 269 | 0 |
HX191066 | 275 | 1 | 242 | 0 |
HX157536 | 199 | 84 | 272 | 0 |
BJ287191 | 199 | 84 | 272 | 0 |
HX191091 | 199 | 84 | 272 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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