| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00016001m |
| Family | PL4 |
| Protein Properties | Length: 687 Molecular Weight: 74772.7 Isoelectric Point: 5.2987 |
| Chromosome | Chromosome/Scaffold: 060673 Start: 796 End: 4686 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 44 | 633 | 0 |
| GVKLHVGQRQVVVGNGVVQVAMLAPEGRITGVGYGGEPSNLLEYDAGQGDSGGYWDSVWNYPGSDLPGQYNTLDSTEFNVVSSSEDQVELSFRSSSGFYC YAIFEHARDCPALNITEARLVFKLNMGKFNYMAITDDIQRYMPSAIDRDEPRAVPLAYKEAVLLVDPKEPQFRGEVDDKYQYSLDNKDNVVHGWISGGDP NPMGFWVITPSNEFKSGGPFKRELTSHVGPTSLTMFFGTHYIGKYMVAKIDNGESWKKVLGPVFIYLNSSPKSGNTPQALWEDAKAQAQAEARNWPYSFL ASPDFPKAAERGSITGRLLVRDSYMSKKDIPAALAYIGLAAPGQAGSWATESKGYQFWTWAASDGAFSIDNVREGVYNLYAFVPGILGDYCYSSPLTIAP GRVMSVRDLVFEPPRSGPTLWEIGVPDRTAAEFYVPDPDPKYINRLFVNKDRYRQYGLWERYAALYPENDLVFTVGKSDESKDWFFAQPTRKVGQDTVPT TWRIRFGLDRVVAGGTYTLRIALAASETCRLQVQVNDGGGGGGVFTTPVMGDDNAIARHGIHGLQWSLEFAIGGHLLLQGDNAIDIKVAG | |||
| Full Sequence |
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| Protein Sequence Length: 687 Download |
| MAAAAVEACW LSFLVVILLI AVAAASKLRL AAQASPEAAA GARGVKLHVG QRQVVVGNGV 60 VQVAMLAPEG RITGVGYGGE PSNLLEYDAG QGDSGGYWDS VWNYPGSDLP GQYNTLDSTE 120 FNVVSSSEDQ VELSFRSSSG FYCYAIFEHA RDCPALNITE ARLVFKLNMG KFNYMAITDD 180 IQRYMPSAID RDEPRAVPLA YKEAVLLVDP KEPQFRGEVD DKYQYSLDNK DNVVHGWISG 240 GDPNPMGFWV ITPSNEFKSG GPFKRELTSH VGPTSLTMFF GTHYIGKYMV AKIDNGESWK 300 KVLGPVFIYL NSSPKSGNTP QALWEDAKAQ AQAEARNWPY SFLASPDFPK AAERGSITGR 360 LLVRDSYMSK KDIPAALAYI GLAAPGQAGS WATESKGYQF WTWAASDGAF SIDNVREGVY 420 NLYAFVPGIL GDYCYSSPLT IAPGRVMSVR DLVFEPPRSG PTLWEIGVPD RTAAEFYVPD 480 PDPKYINRLF VNKDRYRQYG LWERYAALYP ENDLVFTVGK SDESKDWFFA QPTRKVGQDT 540 VPTTWRIRFG LDRVVAGGTY TLRIALAASE TCRLQVQVND GGGGGGVFTT PVMGDDNAIA 600 RHGIHGLQWS LEFAIGGHLL LQGDNAIDIK VAGAGGPAAD RIAGVMYDYI RLEGPSSGGV 660 LKIAPLGRVW MGILFLSSVA LVVMSQ* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09284 | RhgB_N | 0.008 | 217 | 318 | 105 | + Rhamnogalacturonase B, N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B, and adopt a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding. | ||
| cd10316 | RGL4_M | 9.0e-26 | 353 | 452 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 4.0e-50 | 464 | 653 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-55 | 68 | 319 | 269 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-58 | 67 | 219 | 176 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 41 | 657 | 44 | 691 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF27519.2 | 0 | 37 | 657 | 31 | 634 | Os11g0134100 [Oryza sativa Japonica Group] |
| DDBJ | BAF29096.2 | 0 | 41 | 656 | 44 | 690 | Os12g0131900 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066077.1 | 0 | 41 | 657 | 44 | 678 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002450784.1 | 0 | 43 | 686 | 38 | 696 | hypothetical protein SORBIDRAFT_05g018090 [Sorghum bicolor] |
