y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00016455m |
Family | GH47 |
Protein Properties | Length: 306 Molecular Weight: 34669.4 Isoelectric Point: 5.0233 |
Chromosome | Chromosome/Scaffold: 060934 Start: 591 End: 4004 |
Description | Glycosyl hydrolase family 47 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH47 | 8 | 304 | 0 |
MFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPQDYNGSALTLVESLSSLVVLGNFTEFERGILWLSENLTFDVDARINLFECNIRLLGGL ISAHLLAKDFSRQLKDGLYHDQLLHLAESLGNRFLPAFETPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGVLSRLTGDSRYEAAALRALRKLWS MRSSLNLVGTTLDVLTGKWIEYSSGIGAGVDSFYEYLVKAYILFGSDEYWDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQLTSLQAFWPGLQV |
Full Sequence |
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Protein Sequence Length: 306 Download |
MKNKVLEMFY HAYDNYMTYA FPHDELKPLT KSFTDSLSEL GNLNLEHLPQ DYNGSALTLV 60 ESLSSLVVLG NFTEFERGIL WLSENLTFDV DARINLFECN IRLLGGLISA HLLAKDFSRQ 120 LKDGLYHDQL LHLAESLGNR FLPAFETPTG LPYAWINLKY GVMENETTET STSGCGSLIL 180 EMGVLSRLTG DSRYEAAALR ALRKLWSMRS SLNLVGTTLD VLTGKWIEYS SGIGAGVDSF 240 YEYLVKAYIL FGSDEYWDMF HSAYLAVQKY FRHGPWYHEA DMRTGEATHW QLTSLQAFWP 300 GLQVC* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR03897 | lanti_2_LanM | 0.009 | 128 | 263 | 142 | + type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge [Cellular processes, Toxin production and resistance]. | ||
PTZ00470 | PTZ00470 | 2.0e-34 | 3 | 260 | 279 | + glycoside hydrolase family 47 protein; Provisional | ||
pfam01532 | Glyco_hydro_47 | 1.0e-88 | 8 | 304 | 311 | + Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). |
Gene Ontology | |
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GO Term | Description |
GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
GO:0005509 | calcium ion binding |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC73977.1 | 0 | 1 | 304 | 48 | 351 | hypothetical protein OsI_08885 [Oryza sativa Indica Group] |
RefSeq | NP_001048080.1 | 0 | 1 | 304 | 48 | 351 | Os02g0741300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002321565.1 | 0 | 1 | 304 | 36 | 339 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002454305.1 | 0 | 1 | 304 | 42 | 339 | hypothetical protein SORBIDRAFT_04g028330 [Sorghum bicolor] |
RefSeq | XP_002511454.1 | 0 | 1 | 304 | 39 | 342 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4ayr_A | 9.99995e-41 | 5 | 302 | 17 | 294 | A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu |
PDB | 4ayq_A | 9.99995e-41 | 5 | 302 | 17 | 294 | A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu |
PDB | 4ayp_A | 9.99995e-41 | 5 | 302 | 17 | 294 | A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu |
PDB | 4ayo_A | 9.99995e-41 | 5 | 302 | 17 | 294 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
PDB | 1fmi_A | 1e-37 | 2 | 255 | 11 | 241 | A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG637988 | 257 | 44 | 300 | 0 |
CA176745 | 201 | 104 | 304 | 0 |
CA192011 | 201 | 104 | 304 | 0 |
EV219333 | 234 | 70 | 303 | 0 |
EL344044 | 228 | 77 | 304 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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