Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00016514m |
Family | GT47 |
Protein Properties | Length: 532 Molecular Weight: 59561.9 Isoelectric Point: 9.2409 |
Chromosome | Chromosome/Scaffold: 061724 Start: 886 End: 2481 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 129 | 472 | 0 |
CAGRYIYMYDLPPRFNDDLIRDCKKLWRFYDMCPHVANCGMGRALGDEGGVFSPRGWYATNQFTLDLIFHARMKRYECLTGDPSLAAALYVPFYASLDGG RHMWNRTSLRDMLGLDLVAWLARRPQWRAMGGRDHFMVAGRTAWDFRRYEDVDEQWGTKLLHNPAVQNMTVLVLETSPWRRDNLAVPYPTYFHPEAAADV AAWQEKVRAAERPWLFAFAGAPHPWQRETVRPEIFRQCGASRRCRLFRCGGAKSGPRSCKSPGAVMRVFESSDFCLQPRGDSLTRRSTFDAVLAGCIPVF FHPGSAYTQYTLHLPREAERWSVLIMHTDVRERNVSIEETLARI |
Full Sequence |
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Protein Sequence Length: 532 Download |
MASQVRLQTD DQEAMKLTSS EVNLQKGAED AAADKHGGGG GVLRPSRICH LALLSTAFWA 60 FVFFLHSGTQ GDGVGVASVL FKQAAFSLPP LLSANAAGRG RAPPAQPPPP STHAVQAQSS 120 PPPPAADRCA GRYIYMYDLP PRFNDDLIRD CKKLWRFYDM CPHVANCGMG RALGDEGGVF 180 SPRGWYATNQ FTLDLIFHAR MKRYECLTGD PSLAAALYVP FYASLDGGRH MWNRTSLRDM 240 LGLDLVAWLA RRPQWRAMGG RDHFMVAGRT AWDFRRYEDV DEQWGTKLLH NPAVQNMTVL 300 VLETSPWRRD NLAVPYPTYF HPEAAADVAA WQEKVRAAER PWLFAFAGAP HPWQRETVRP 360 EIFRQCGASR RCRLFRCGGA KSGPRSCKSP GAVMRVFESS DFCLQPRGDS LTRRSTFDAV 420 LAGCIPVFFH PGSAYTQYTL HLPREAERWS VLIMHTDVRE RNVSIEETLA RIPPETVTAM 480 REEVIRLIPR VVYADPRSGR VDFKDAFDVA VEAVIDRVAR RRRGDVEGRR R* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-65 | 128 | 472 | 360 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK54285.1 | 0 | 127 | 512 | 64 | 450 | AC034258_3 hypothetical protein [Oryza sativa Japonica Group] |
DDBJ | BAH94918.1 | 0 | 127 | 512 | 95 | 481 | Os10g0459300 [Oryza sativa Japonica Group] |
RefSeq | NP_001150032.1 | 0 | 126 | 530 | 55 | 461 | xyloglucan galactosyltransferase KATAMARI 1 [Zea mays] |
RefSeq | XP_002464524.1 | 0 | 15 | 529 | 1 | 489 | hypothetical protein SORBIDRAFT_01g020080 [Sorghum bicolor] |
RefSeq | XP_002468517.1 | 0 | 34 | 530 | 12 | 538 | hypothetical protein SORBIDRAFT_01g047270 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EL456596 | 275 | 174 | 447 | 0 |
JG636298 | 267 | 200 | 465 | 0 |
EE075461 | 254 | 236 | 489 | 0 |
CX076275 | 264 | 203 | 465 | 0 |
EL472986 | 258 | 191 | 447 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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