Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00016759m |
Family | GH3 |
Protein Properties | Length: 813 Molecular Weight: 87551.4 Isoelectric Point: 7.4924 |
Chromosome | Chromosome/Scaffold: 063155 Start: 1154 End: 4052 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 101 | 368 | 0 |
GAPRVGLPPYKWWSEALHGLSSTGPTTLFDDLRSRPGNHSGRATVNNGTVFANVINSAASFNETLWKSIGQAVSTEARAMYNLGKGGLTYWSPNINVVRD PRWGRALETPGEDPFVAGRYAVNFVRGMQDIPGHDGGDPYARPIKTAACCKHYAAYDVDDWRNHTRFTFNARVSERDMAESFLRPFEMCVREGDAGSVMC SYNRVNGVPACADARLLSGTVRGDWQLHGYIVSDCDAVRVMTDNATWLNFTGADSSAAAIRAGLDLDC |
Full Sequence |
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Protein Sequence Length: 813 Download |
MASSSPSHLL LLVLAASLLC GTIPVACSSS RTAAATTVNV TAFGKAYGKV CDADRFAELG 60 LNMSAFPYCD ASLPYAARVR DLIGWMTVEE KVGNLGDVSR GAPRVGLPPY KWWSEALHGL 120 SSTGPTTLFD DLRSRPGNHS GRATVNNGTV FANVINSAAS FNETLWKSIG QAVSTEARAM 180 YNLGKGGLTY WSPNINVVRD PRWGRALETP GEDPFVAGRY AVNFVRGMQD IPGHDGGDPY 240 ARPIKTAACC KHYAAYDVDD WRNHTRFTFN ARVSERDMAE SFLRPFEMCV REGDAGSVMC 300 SYNRVNGVPA CADARLLSGT VRGDWQLHGY IVSDCDAVRV MTDNATWLNF TGADSSAAAI 360 RAGLDLDCGE SWIQEGGRPL RDFLSVYGIA AVAQGKMRES DIDNALRNQF MTLMRLGYFD 420 NIPRYAALNE TDICTDDHKS LALDGARQGI VLLKNHGDLL PLDAKKILAV AVHGPHARAP 480 EKVMDGDYTG PPCRYVTPRQ GISKDVKISH KANTTIYLGG INLHIEREGN DREDILLPKN 540 QTQEILHFAA ASPNPIILVI LSGGGIDISF AQNHPKIGAI LWAGYPGGEG GNAIADVIFG 600 RYNPGGRLPL TWYKNKYIQQ IPMTSMEFRP VPELGYPGRT YKFYDGPEVL YPFGYGLSYT 660 KFLYETGTNG SAVTIPVPGG HCKGLSYKPS VATTPACQAV DVNGHACAET VSFNVSVTNA 720 GGRDGAHVVL VYTAPPPEVA QAPIKQVAAF RRVLVPAKGT ATVPFTLNVC RAFGIVERTA 780 YTVVPSGVSK VLVENGDSSS SVSFPVKIEL SV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-45 | 450 | 660 | 240 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 6.0e-46 | 86 | 516 | 453 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 4.0e-55 | 87 | 408 | 349 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 3.0e-66 | 77 | 769 | 785 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 64 | 803 | 770 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY81859.1 | 0 | 8 | 812 | 9 | 816 | hypothetical protein OsI_37025 [Oryza sativa Indica Group] |
RefSeq | NP_001068511.1 | 0 | 9 | 812 | 15 | 816 | Os11g0696400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146482.1 | 0 | 40 | 812 | 52 | 835 | hypothetical protein LOC100280070 [Zea mays] |
RefSeq | XP_002437062.1 | 0 | 29 | 812 | 22 | 809 | hypothetical protein SORBIDRAFT_10g020500 [Sorghum bicolor] |
RefSeq | XP_002455502.1 | 0 | 40 | 812 | 40 | 825 | hypothetical protein SORBIDRAFT_03g012290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 79 | 767 | 7 | 696 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
PDB | 3u48_A | 0 | 79 | 767 | 7 | 696 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
PDB | 3u4a_B | 0 | 79 | 767 | 7 | 696 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
PDB | 3u4a_A | 0 | 79 | 767 | 7 | 696 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
PDB | 2x41_A | 8e-40 | 78 | 763 | 3 | 671 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |