| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00016802m |
| Family | GH29 |
| Protein Properties | Length: 498 Molecular Weight: 54965.1 Isoelectric Point: 4.6924 |
| Chromosome | Chromosome/Scaffold: 065413 Start: 1253 End: 4438 |
| Description | alpha-L-fucosidase 1 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH29 | 40 | 321 | 0 |
| AQLRWQLSEMALFLHFGPNTFTDSEWGTGHADPSVFAPSALDAGQWARVAARDGFGRVVLTAKHHDGFCLWPSALTNYSVAASPWRAGAGDVVGELAAAA RAEGVGLGLYLSPWDRHEPVYGDTIAYGDVEEVWLDGAKGDAKKMDYMFDAWFALIHQLQQRVVIFSDAGPDTRWVGDEAGVAGYTCWSPLNKSYVTIGH TIDEYQHCGDPFGQDWVPAQCDVSIRPGWFWHASEKPKNATTLLDIYYKSVGRNCLLILNVRPNSYGLISDEDMKVLQEFTE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 498 Download |
| MAALLPVLLT HLLLLCAHGA TASAAATPPP LPVLPIPSYA QLRWQLSEMA LFLHFGPNTF 60 TDSEWGTGHA DPSVFAPSAL DAGQWARVAA RDGFGRVVLT AKHHDGFCLW PSALTNYSVA 120 ASPWRAGAGD VVGELAAAAR AEGVGLGLYL SPWDRHEPVY GDTIAYGDVE EVWLDGAKGD 180 AKKMDYMFDA WFALIHQLQQ RVVIFSDAGP DTRWVGDEAG VAGYTCWSPL NKSYVTIGHT 240 IDEYQHCGDP FGQDWVPAQC DVSIRPGWFW HASEKPKNAT TLLDIYYKSV GRNCLLILNV 300 RPNSYGLISD EDMKVLQEFT EIQHTIFSQN FAANATVTAN SVRGGQDNLQ FAPSNVLEDS 360 IYSYWAPQEG QSSWEMLFDL GKSTSFNMLQ LQEPIQLGQR VIEFHVDILI DELWQTIVEA 420 TTIGYKRLLK FPITESQCLK LSIISARADP LISFFGVFMD SFSDSYNLEN CDKRTNNNEI 480 IMLRTGYAAG NRSTATM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00812 | Alpha_L_fucos | 4.0e-24 | 75 | 321 | 274 | + Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis. | ||
| pfam01120 | Alpha_L_fucos | 4.0e-24 | 75 | 321 | 275 | + Alpha-L-fucosidase. | ||
| COG3669 | COG3669 | 2.0e-58 | 41 | 458 | 453 | + Alpha-L-fucosidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004560 | alpha-L-fucosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG47369.1 | 0 | 16 | 497 | 15 | 513 | alpha-L-fucosidase 1 precursor [Zea mays] |
| EMBL | CAH68057.1 | 0 | 17 | 497 | 20 | 517 | B0103C08-B0602B01.14 [Oryza sativa (indica cultivar-group)] |
| RefSeq | NP_001053546.1 | 0 | 17 | 497 | 20 | 517 | Os04g0560400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131532.1 | 0 | 16 | 497 | 15 | 513 | hypothetical protein LOC100192871 [Zea mays] |
| RefSeq | XP_002448322.1 | 0 | 18 | 497 | 17 | 513 | hypothetical protein SORBIDRAFT_06g025200 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ues_B | 0 | 37 | 453 | 19 | 471 | A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From Bifidobacterium Longum Subsp. Infantis Complexed With Deoxyfuconojirimycin |
| PDB | 3ues_A | 0 | 37 | 453 | 19 | 471 | A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From Bifidobacterium Longum Subsp. Infantis Complexed With Deoxyfuconojirimycin |
| PDB | 3mo4_B | 0 | 37 | 453 | 21 | 473 | A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From Bifidobacterium Longum Subsp. Infantis Atcc 15697 |
| PDB | 3mo4_A | 0 | 37 | 453 | 21 | 473 | A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From Bifidobacterium Longum Subsp. Infantis Atcc 15697 |
| PDB | 3eyp_B | 0 | 32 | 461 | 5 | 457 | A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From Bacteroides Thetaiotaomicron |
