Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00016861m |
Family | CE8 |
Protein Properties | Length: 295 Molecular Weight: 32216.2 Isoelectric Point: 8.1147 |
Chromosome | Chromosome/Scaffold: 064636 Start: 1890 End: 3480 |
Description | pectinesterase 11 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 12 | 288 | 0 |
TVDQSGRGDHRRVQDAVDAAPANSSAGSVVVIRIKPGLYREKVVLDKPCVTLVGTSASSTVITWNEAWVAADSPTVSVLAPDFIAKRLTFQNTFGTSGPA VAMRVAEDRAAFYGCRFVSFQDTLLDDTGRHYYRGCYIEGGTDFIFGNARALFDKCHLHSTSLVGGAFTAHKRSAESEDTGFSFVGCKLTGVGKSTSILG RPWGPYSRVVFALSYMSSTVRPEGWDGWSEDPAKQRTAFYGQYQCYGEGSWTEGRVAWSRDLSQAEAAPLITKVWVD |
Full Sequence |
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Protein Sequence Length: 295 Download |
MPGPRRRQLI LTVDQSGRGD HRRVQDAVDA APANSSAGSV VVIRIKPGLY REKVVLDKPC 60 VTLVGTSASS TVITWNEAWV AADSPTVSVL APDFIAKRLT FQNTFGTSGP AVAMRVAEDR 120 AAFYGCRFVS FQDTLLDDTG RHYYRGCYIE GGTDFIFGNA RALFDKCHLH STSLVGGAFT 180 AHKRSAESED TGFSFVGCKL TGVGKSTSIL GRPWGPYSRV VFALSYMSST VRPEGWDGWS 240 EDPAKQRTAF YGQYQCYGEG SWTEGRVAWS RDLSQAEAAP LITKVWVDGQ EWLQ* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 1.0e-83 | 10 | 293 | 305 | + pectinesterase | ||
PLN02304 | PLN02304 | 7.0e-84 | 10 | 294 | 305 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-90 | 10 | 293 | 298 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-106 | 9 | 294 | 308 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-177 | 2 | 294 | 295 | + putative pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF05574.2 | 0 | 9 | 294 | 41 | 325 | Os01g0634600 [Oryza sativa Japonica Group] |
GenBank | EEC71149.1 | 0 | 9 | 294 | 41 | 330 | hypothetical protein OsI_02978 [Oryza sativa Indica Group] |
RefSeq | NP_001043660.1 | 0 | 9 | 294 | 4 | 293 | Os01g0634600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002281308.1 | 0 | 2 | 294 | 55 | 344 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002458207.1 | 0 | 3 | 294 | 5 | 301 | hypothetical protein SORBIDRAFT_03g028930 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.60519e-45 | 11 | 294 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-39 | 13 | 294 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-22 | 8 | 286 | 30 | 361 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 7e-19 | 22 | 279 | 19 | 326 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 7e-19 | 22 | 279 | 19 | 326 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CJ554400 | 223 | 72 | 293 | 0 |
AM722128 | 265 | 1 | 261 | 0 |
AM721699 | 262 | 1 | 258 | 0 |
BM140477 | 181 | 84 | 264 | 0 |
CJ525963 | 205 | 89 | 293 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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